LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g1079	ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGATAACACCACGGCAAGGCAGGTGACTTTTTCGAAGAGACGCAGAGGTTTGTTCAAAAAAGCTGAGGAGCTCTCTGTTCTGTGTGATGCTGATGTTGCTCTCATTATCTTCTCTTCTACTGGGAAGCTTTTTGAGTACTCCAGCTTAAGTATGAAAGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTTGCAAAGATGGAACAACCATCTCTCGAGTTGCAGCTTGTTGAAAACAGTAACTGCACTAGATTGAGCAAAGAAGTTGCTGAGAAAAGCCGTCAATTAAGGCAGATGAGAGGAGAGGATCTTCACGGTTTAGATATCGAAGAATTACAACAACTAGAAAGATTTCTCGAAGCTGGGCTGGGACGTGTGATAGAAAAGAAGGGAGAGAAGATTATGAATGAGATCTTTGATCTCCAAACAAAGGGAATGCATTTGATGGAAGAGAACGAGCGACTAAAGCGTCATGTGGCGAACATAACAAATGGGTGTGAGAACATAGTTGGTGATGAAGCTGGTCAATCTTCAGCAGAATCTGCCACTAACTTTGGCACTGGACCTCCCCATGACTCTGATAGCTCTGACACCTCGCTTAAGTTGGGGTCAGCTACCGAACCAAGGTTGAAGGGAAATGCATTAACATATATGACCAAAGATAATGGTCTGAATTTCGTAAATGAATTGTCAATGGATGAAGAATATGATGTGATAGTGTTGGGAACGGGACTGAAAGAATGCATCCTCAGTGGTCTTCTCTCCGTGGATGGCCTAAAAGTGTTGCATATGGATAAAAATGATTATTATGGAGGAGAGTCCACGTCCCTTAATCTCAATCAGCTTTGGAAGCGATTCAAGGGCACTGATTCTCCACCTCAAAATTTGGGTTCTAGCAAAGAATACAATGTTGATATGATCCCAAAGTTCATGATGGCAAATGGTACTTTGGTTCGGGTTCTAATCCACACTAATGTTACCAAATATCTTAGTTTCAAGGCTGTGGATGGAAGCTTTGTGTACAACAAAGGAAAGATTCATAAAGTACCAGCAAATGATGTGGAAGCTTTGAAATCCCCCCTTATGGGGTTGTTTGAGAAGCGGCGTGCACGAAAGTTTTTCATTTATGTACAAGACTATGATGAAAATGATCCAAAATCTCATGAAGGGATGGACCTTAACCAAGTTACAGCAAAAGAACTCATTTCGAAATATGGGTTGGATGACAACACAATTGACTTCATTGGCCATGCATTGGCGCTACATTTGGATGATGCATACTTAACTCAGCCTGCAATGGATTTTGTAAAAAGAATGAAGCTATATGCAGAATCCTTAGCACGTTTTCAGGGTGGATCTCCTTATATTTATCCACTCTATGGACTGGGAGAGCTTCCTCAGGGATTTGCTCGTTTGAGTGCTGTTTATGGTGGCACCTACATGCTGAACAAGCCAGAATGCAAGGTTGAGTTTGATGAGAGTAAAAAGGCCATAGGTGTAACATCCGAAGGAGAAACAGCAAAATGCAAAAAAGTTGTTTGTGACCCTTCATACTTACCAGACAAGGTGAAGAAGGTTGGGAAAGTGAACCGGGCTATTTGTATTATGAGCCATCCTATCCCAAACACCCATGACTCTCCATCTGTTCAGGTTATTCTGCCTCAGAAACAGCTTCGGCGAAAATCAGATATGTACCTTTTTTGCTGCTCCTACTCTCATAATGTAGCTCCAAAGGGAAAATATATTGCATTTGTAACAACAGAAGCAGAAACTGATAATCCTCAGGAGGAATTGAAGCCTGGCATAGATCTCCTTGGACCTGTGGATGAAATCTTTTTTGACTCCTATGATAGATATGAACCTACGAACCAGCACGATGATGATAACTGCTTCATATCCACAAGCTATGATCCTACAACACATTTTGAAACCACAGTGAGAGACGTGATTGCTTTGTACAGCAAGATAACTGGAAAGGAATTGGACCTATCTGTGGATCTGAGTGCTGCATGTGCTGCTGAAGAATGA	2064	0.4167	MAREKIQIKKIDNTTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSLSMKEILERHHLHSKNLAKMEQPSLELQLVENSNCTRLSKEVAEKSRQLRQMRGEDLHGLDIEELQQLERFLEAGLGRVIEKKGEKIMNEIFDLQTKGMHLMEENERLKRHVANITNGCENIVGDEAGQSSAESATNFGTGPPHDSDSSDTSLKLGSATEPRLKGNALTYMTKDNGLNFVNELSMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDKNDYYGGESTSLNLNQLWKRFKGTDSPPQNLGSSKEYNVDMIPKFMMANGTLVRVLIHTNVTKYLSFKAVDGSFVYNKGKIHKVPANDVEALKSPLMGLFEKRRARKFFIYVQDYDENDPKSHEGMDLNQVTAKELISKYGLDDNTIDFIGHALALHLDDAYLTQPAMDFVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDESKKAIGVTSEGETAKCKKVVCDPSYLPDKVKKVGKVNRAICIMSHPIPNTHDSPSVQVILPQKQLRRKSDMYLFCCSYSHNVAPKGKYIAFVTTEAETDNPQEELKPGIDLLGPVDEIFFDSYDRYEPTNQHDDDNCFISTSYDPTTHFETTVRDVIALYSKITGKELDLSVDLSAACAAEE	687

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal23g1079	687	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
Lal23g1079	687	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
Lal23g1079	687	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
Lal23g1079	687	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
Lal23g1079	687	PANTHER	GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR	244	683	-	-
Lal23g1079	687	PRINTS	Rab GDI/REP protein family signature	249	267	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	PRINTS	Rab GDI/REP protein family signature	267	284	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	PRINTS	Rab GDI/REP protein family signature	312	329	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	PRINTS	Rab GDI/REP protein family signature	329	345	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	PRINTS	Rab GDI/REP protein family signature	378	393	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	PRINTS	Rab GDI/REP protein family signature	455	472	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	PRINTS	Rab GDI/REP protein family signature	473	494	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	Gene3D	Guanine Nucleotide Dissociation Inhibitor, domain 1	361	466	-	-
Lal23g1079	687	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983
Lal23g1079	687	PANTHER	RAB GDP-DISSOCIATION INHIBITOR	244	683	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	Pfam	GDP dissociation inhibitor	244	676	IPR018203	GO:0005092\|GO:0007264
Lal23g1079	687	MobiDBLite	consensus disorder prediction	182	215	-	-
Lal23g1079	687	Pfam	K-box region	92	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
Lal23g1079	687	SUPERFAMILY	FAD/NAD(P)-binding domain	244	531	IPR036188	-
Lal23g1079	687	SUPERFAMILY	FAD-linked reductases, C-terminal domain	535	632	-	-
Lal23g1079	687	Gene3D	Guanine Nucleotide Dissociation Inhibitor, domain 2	300	630	-	-
Lal23g1079	687	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
Lal23g1079	687	MobiDBLite	consensus disorder prediction	182	217	-	-
Lal23g1079	687	SUPERFAMILY	SRF-like	3	79	IPR036879	GO:0003677\|GO:0046983
Lal23g1079	687	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
Lal23g1079	687	PRINTS	Rab GDI protein signature	259	271	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	PRINTS	Rab GDI protein signature	318	331	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	PRINTS	Rab GDI protein signature	368	383	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	PRINTS	Rab GDI protein signature	425	439	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	PRINTS	Rab GDI protein signature	523	537	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	PRINTS	Rab GDI protein signature	566	582	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	PRINTS	Rab GDI protein signature	591	609	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	PRINTS	Rab GDI protein signature	624	643	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	PRINTS	Rab GDI protein signature	645	665	IPR000806	GO:0005093\|GO:0015031
Lal23g1079	687	Coils	Coil	94	114	-	-
Lal23g1079	687	CDD	MADS_MEF2_like	2	77	IPR033896	GO:0000977\|GO:0045944
Lal23g1079	687	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
Lal23g1079	687	SUPERFAMILY	FAD/NAD(P)-binding domain	633	676	IPR036188	-
Lal23g1079	687	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
Lal23g1079	687	Gene3D	-	245	673	IPR036188	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal23g1079	Lal-Chr23	12459421	12469158	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal23g1079	1	215	MADS-box Gene Family	AT2G22540	66.949	7.84e-95	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lal23g1079		GDI	1.4e-224	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g1079	K17255		-	zju:107425147	811.601