Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1077 ATGGAATTCGAAGATCAAGAGGAGCAAGAGGAAGAGCTTTGTTTCAACCCAATGGATAACCCGAGCCGGGTTAAAATGTCCGGTTCAGTTGAACCCATGGTGATGCCTCAACCTGTTAGGAGCAGCAACAACGCGAGGTACAGGGAGTGTTTGAAGAACCACGCCGTCGGCATCGGCGGTCACGCTCTCGACGGCTGCGGGGAGTTCATGCCGGCTGGAACAGAAGGAACCTTCGACGCACTCAAATGCGCCGCCTGCAACTGCCATCGCAATTTCCACCGCAAGGAAACCGACCCCGCTGCCATTGTCACCGGTTCAGACCCTTTCCTCCTAACTAACCACCCTCACCACTACCAGCCACCATCGCATTTTGCGGCGTACTACCGTTCCCCGGCAGGGTACCTTCACGTGGGGGGAGGACACCACCAGAGAGGTGCTGTGCCGGGAGGTGCACTAGCTCTGCCGTCGACCTCTGGTGGCGGCTTAAGAGGATGTGGGACCCAGAGCATGAGGGAGGATCAAGAAGATATGTCGTATCCAATGAGTGGTGGAGGGTCGAAGAAGAGACACAGGACAAAGTTCACACAGGAGCAGAAGGACAAAATGCTTGAACTTGCGGAGAGACTAGGTTGGAGAATTCAGAAGCATGATGAGAGTGTGGTCCAGGAGTTCAGTAACGAGACTGGGGTCAAGCGTCACGTTCTTAAGATTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 753 0.5432 MEFEDQEEQEEELCFNPMDNPSRVKMSGSVEPMVMPQPVRSSNNARYRECLKNHAVGIGGHALDGCGEFMPAGTEGTFDALKCAACNCHRNFHRKETDPAAIVTGSDPFLLTNHPHHYQPPSHFAAYYRSPAGYLHVGGGHHQRGAVPGGALALPSTSGGGLRGCGTQSMREDQEDMSYPMSGGGSKKRHRTKFTQEQKDKMLELAERLGWRIQKHDESVVQEFSNETGVKRHVLKIWMHNNKHTLGKKP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1077 250 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 187 243 IPR006455 -
Lal23g1077 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 23 249 - -
Lal23g1077 250 SUPERFAMILY Homeodomain-like 176 248 IPR009057 -
Lal23g1077 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 249 - -
Lal23g1077 250 MobiDBLite consensus disorder prediction 175 194 - -
Lal23g1077 250 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 46 96 IPR006456 -
Lal23g1077 250 Pfam ZF-HD protein dimerisation region 45 97 IPR006456 -
Lal23g1077 250 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 47 96 IPR006456 -
Lal23g1077 250 MobiDBLite consensus disorder prediction 1 21 - -
Lal23g1077 250 Gene3D - 172 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1077 Lal-Chr23 12445632 12446384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1077 1 246 ZF-HD Transcription Factor Family AT4G24660 48.387 2.67e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal23g1077 ZF-HD_dimer 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1077 - - aip:107639896 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0508 16 3211431 3212195 Lal23g1077 23 12445632 12446384 LSH
Lal15g0453 15 3066278 3067054 Lal23g1077 23 12445632 12446384 LSH