Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1071 ATGGATGAAGCACTGAGTTTTTTCACGGGCATGCCCCCGATTCCACAACCCAACCCTCAAGACACCGTCATGGTCAGCGACCACCCCCGCAGCAAGAAGTCCACCGTCTCTAACAAGAGAGCCTTGCAAGAAAACAGTTCCTGTGCTGCCGCTTCCTCCGGCGGTGCCATACGGTACCGTGGTGTGAGGCGCAGGCCGTGGGGCCGTTATGCTGCAGAGATAAGAGACCCTCAGTCGAAGGAGCGCCGCTGGCTTGGTACCTTTGATACGGCGGAGGAAGCTGCTTGTGCCTATGACTCCGCCGCCCGTGCAATGCGTGGCCTTAAGGCTCGCACTAACTTTGTTTACCCACCTTCACCATCTTCTCACGCTAAAGATTTTTGTCCCTTCGATTTCCCAATACAACCTAATCCACAACAACACTTGAACACAATTTCACCTTGTTCTGATTTAACTACTCATTACAACCGAAACCCTTCTTCTCTTAACACGCCTCTCTTTAGTGACTTCCTCAACACTTCTTCTGCACATCGCTTTAACAACAACATTGTCACTTCTCCTTCGACCCCATTTGTGAACTCTTATTTTAGTAGCGTGGGTGCTGATAGTAACACTTGTGCGGATGTTGAAAACTTCTACGGTAACAAAACTGCTGATGAAAATGTGAGTTTGGAATTTTCTGATTCTGGACTATTAGAAGATATAGTTCATAAGTTCTTGCCAAAATCTAAGTCTGAGAATTGTGAAACTCCACAGAAAATCTCTGAGGCTAATATCTATAACACAGTTTGTTCTGATAATGTGTTCCTTTCAAGTGCTCCATGCCACGATGAGATCATAGGGTTGATTCCTAAGAACAATGGCTTTGGTGGTGAGTCATCCTTTGACTATTACCAGGATTTCCCTATGCAGCAATTTGGCACTTTCAACAATGGGTTTAATGTTGATGCTGGCCAAATTGTGCCTCCTATTGGGAATGAACAATTCATGATGAATAATGAAGATTACTCTTCTATCATTGAAGATATTTTTCAGTATCCAGATTTAGTCAATGATTTTACACTCAGGACGCATAATGCTTAG 1083 0.446 MDEALSFFTGMPPIPQPNPQDTVMVSDHPRSKKSTVSNKRALQENSSCAAASSGGAIRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDSAARAMRGLKARTNFVYPPSPSSHAKDFCPFDFPIQPNPQQHLNTISPCSDLTTHYNRNPSSLNTPLFSDFLNTSSAHRFNNNIVTSPSTPFVNSYFSSVGADSNTCADVENFYGNKTADENVSLEFSDSGLLEDIVHKFLPKSKSENCETPQKISEANIYNTVCSDNVFLSSAPCHDEIIGLIPKNNGFGGESSFDYYQDFPMQQFGTFNNGFNVDAGQIVPPIGNEQFMMNNEDYSSIIEDIFQYPDLVNDFTLRTHNA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1071 360 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Lal23g1071 360 MobiDBLite consensus disorder prediction 1 47 - -
Lal23g1071 360 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Lal23g1071 360 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 220 360 - -
Lal23g1071 360 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 195 - -
Lal23g1071 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 220 360 - -
Lal23g1071 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 195 - -
Lal23g1071 360 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Lal23g1071 360 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lal23g1071 360 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Lal23g1071 360 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Lal23g1071 360 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Lal23g1071 360 CDD AP2 58 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1071 Lal-Chr23 12415121 12416203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1071 20 259 AP2-EREBP Transcription Factor Family AT1G24590 37.906 3.77e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal23g1071 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1071 - - lang:109332560 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0514 16 3266814 3267930 Lal23g1071 23 12415121 12416203 LSH
Lal15g0459 15 3119327 3120448 Lal23g1071 23 12415121 12416203 LSH