Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1070 ATGCCTCTTCTACTCGCAGCTACACAAACACAACCTTTGTTAATTCCTTCCATCACTTCTCACCATCATCACAGCTTCAAAATTCAACCTCTTATTATCAGAGCCTCTCAGAAAAATCACTATCCTTTCACTACTCTCATTTTCTCTTCAGGTTCGCGCCACATTCTGTTAACTCATTATCCTCTAAAATCTGCTTCCATAAATGGGCTCTCCGTCCAGAACAATCCAGAAGCTTCGAGTGAAGTCAATGCTGTTGATTTTCTTCACAGACTCCGGAAATGGATTCAGTTCCTTCCTTCGATTTTGCCAGGTGGAAAATGGTGGGAGGTCTCAGACGACGATGCTCAGGTTCAAGTTCTGGCTAAACCCATCACTGTGTGGCGCGCATTGACCAAAATGTGGCACCTTGTTTCTCGTGACCGATGGGTCACTTTTGCTGCTTTCACCGCTCTCATTTTTGCTGCGGTTTCGGAGATTTCAATACCGCATTTCATTACGGCATCAATATTCTCAGCACAAAATGCTGACATCACAGTTTTCCATCGGAACGTGCGTTTGTTAGTTCTGATGTGTATAATGTCGGGAATATGCAGCCTTACTATAACTAATGCTTTGGAATATGCTTTGCCAAAAGGGGGGAATTCTCTTTGCTTTTGTGTGTATTGTGTCCTACACTCTTGTTCTAATATAGATTTCCGTTTTATTCGAAACTTTTCATCTTGCATGTGGGATATGAGGATTCCTAACAAGCATTTTCCTTGCTGCAGTGGAATACGGTGTTGCTGTTTTGGCATTGCAAACATGCTTCTGGTTAAGAGAATGAGAGAAACATTGTACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACACTGAGACAGTTGGTGTTTTAACAAGTAGGCTTGGGGCAGATTGTCAACAAGTATCGCGGGTTATTGGAAAAGATATTAACTTCATATTGCGCAATTTTCTTAAGGGAACAGGTTCATTAATCTATTTGTTGACTTTGTCTTGGGCACTTGGTTTATCTACATTGTTGATATGCTTCATACTAGCAGCAGTCATGCTACGTTATGGAAGGTACCAGAAAAAGTCAGCAAGGTTAAACCAAGAAGTAGCTGCTTCTGCCAATGAAGTAGCTCAGGAGACATTCTCTCTTATTAGAACTGTCCATGTTTATGGAACAGAAAAGGAAGAACTTGGAAGGTACAAATCGTGGTTGGAGAAATTAGCTGACATAAGCTTGCGACAAATTGCTGCTTATGGATTTTGGAATTTAAGCTTCAACACTCTTTATCATTCAACTCAGGTTATTGCCGTGCTATTTGGAGGAGTGTCTATTCTTGCGGGTCATATTACAGCAGAGAAACTTACCAAGTTTATACTATACAGTGAATGGCTAATTTTTTCAACCTGGTTGGTGGGAGACAGTATCTCCAATCTGATGCAATCTGTTGGGTCTTGTGAAAAAGTTTTCAATTTAATGGATCTCACATCTAGCAGCCAATATATAGCTAGAGGCAAATTGCTTAATCCCCCTACCTGCCACCATGATGCACACATTGGATTGTCAGAGAAAGTTTACCATGGTTTCTTAAGAGTGAAGTTGCAGAGCTTAACAGGACAAATTGAGTTTCTAAACATATCCTTTCACTATCCTTCAAGGCCAACGGTACCGGTAGTGCAACTTGTAAACTTTGTTGTCCATCCCAGTGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACACTGGTAAACCTTTTGCTGCGGCTGTATGAGCCTACAAATGGTCAGATTTTGATAGATGGAATCCCTCTTAAAAACTTGGATGTCACATGGTGGAGAGAGAGAATCGGATATGTGGCACAGGAACCCAAGCTGTTCCGAATGGATATTAGTTCAAACATCAGATACGGATGTACTCGAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAAGCTTATGCCCATGATTTCATCTCTGCACTTCCCAATGGTTATGAAACGCTTGTTGATGATGATTTGTTAAGTGGTGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAATATAATGTCAAGGGTGTTCTTCGATCTGTGAGAAGTGATTCCCATTCGAGGAGAAGTGCTATAGTCATTGCACACAGGCTTTCTACCATACAAACAGCTGACAGGATTGTGGTAATTGATTGTGGTCAAGTTGTTGAGAATGGAAGCCACAGGGAACTTCTGTTAAAAGATGGTCTATATGCACGGTTGACTAGAAAGCAGGCTGATGCCATGGCATGA 2370 0.4148 MPLLLAATQTQPLLIPSITSHHHHSFKIQPLIIRASQKNHYPFTTLIFSSGSRHILLTHYPLKSASINGLSVQNNPEASSEVNAVDFLHRLRKWIQFLPSILPGGKWWEVSDDDAQVQVLAKPITVWRALTKMWHLVSRDRWVTFAAFTALIFAAVSEISIPHFITASIFSAQNADITVFHRNVRLLVLMCIMSGICSLTITNALEYALPKGGNSLCFCVYCVLHSCSNIDFRFIRNFSSCMWDMRIPNKHFPCCSGIRCCCFGIANMLLVKRMRETLYSSLLLQDISFFDTETVGVLTSRLGADCQQVSRVIGKDINFILRNFLKGTGSLIYLLTLSWALGLSTLLICFILAAVMLRYGRYQKKSARLNQEVAASANEVAQETFSLIRTVHVYGTEKEELGRYKSWLEKLADISLRQIAAYGFWNLSFNTLYHSTQVIAVLFGGVSILAGHITAEKLTKFILYSEWLIFSTWLVGDSISNLMQSVGSCEKVFNLMDLTSSSQYIARGKLLNPPTCHHDAHIGLSEKVYHGFLRVKLQSLTGQIEFLNISFHYPSRPTVPVVQLVNFVVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGIPLKNLDVTWWRERIGYVAQEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEYNVKGVLRSVRSDSHSRRSAIVIAHRLSTIQTADRIVVIDCGQVVENGSHRELLLKDGLYARLTRKQADAMA 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1070 789 SMART AAA_5 571 766 IPR003593 -
Lal23g1070 789 ProSitePatterns ABC transporters family signature. 682 696 IPR017871 GO:0005524
Lal23g1070 789 Pfam ABC transporter 565 710 IPR003439 GO:0005524
Lal23g1070 789 Gene3D ABC transporter type 1, transmembrane domain 126 497 IPR036640 GO:0005524|GO:0016021
Lal23g1070 789 SUPERFAMILY ABC transporter transmembrane region 255 497 IPR036640 GO:0005524|GO:0016021
Lal23g1070 789 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 544 783 IPR003439 GO:0005524
Lal23g1070 789 CDD ABC_6TM_TAP 147 492 - -
Lal23g1070 789 Gene3D - 534 788 IPR027417 -
Lal23g1070 789 Pfam ABC transporter transmembrane region 256 470 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal23g1070 789 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 255 484 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal23g1070 789 PANTHER ABC TRANSPORTER B FAMILY 83 198 - -
Lal23g1070 789 PANTHER ABC TRANSPORTER B FAMILY 254 788 - -
Lal23g1070 789 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 254 788 - -
Lal23g1070 789 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 83 198 - -
Lal23g1070 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 784 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1070 Lal-Chr23 12403731 12411541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1070 273 787 Calmodulin-binding Proteins AT2G36910 34.405 3.74e-68 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1070 - - gmx:100775951 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0462 15 3140529 3149377 Lal23g1070 23 12403731 12411541 LSH