Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1052 ATGGCTAACGACAATTCCTCAAATGGGTCGCCACCGTCTAATTCCGGCAACGATTCGCCTCCTCCGACGCCACCTTCCCCGCCTTCCGATGATTCAGAGCCTCCCCAAAGTTCGCCACCAAAGTCTCCGCCTCCGCCGTCTCCGCCGAATTCTCCGCCACCGTCGCCTCCGTCGAATTCTCCGCCACCACCGTCTCCATCTCAATCTGCACCGCCACCCCCATCTAAATCTCCGCCACCTTCCTCGTCCCCGCCACCAACATCGCCGCCTCCACCGTCACAGTCTCCACCTCCTGCGCCGAAATCATCATCACCACCATCACCTCCTAATATTTCACCACCTCCTAATATTTCACCACCTCCTAAGAGTCCACCACCACAAAAAAATTCACCCCCTCCCCCCTCCCAACCTCCCCTAACACCACCACCAGCGGCACCACCACCTTCAACACCACTAGCACCACCGTCGAATGGTGATTCTCCACCTCCAAGCCCCTCTCAGCAGTCAACTCCACCGCAACCTCAAACCCCTCCTCCTCCTTCTCCTCCTCCTAATAACACATTTTTTCCTCCAACTCCACCAGCACCTGGTTCAAATGTAACTCCGGCTAAGACACCACCACCTGGACCAGTGCCAAAATCTCCACCAGTTTCTCCCTCTGGCCCCCATCCAAAACCAGGTGTTACTCCTTCTAGTAACCAATTCCCACCATCTTCGGATGATGCCGGTGACAATAACAATACAGGAAAAATTGTTGGCCTTACCATTGGTGGGGTTGCAATTCTTGCTGTTCTTGCTCTACTTCTCATTTTAGTATGCAGGCGCAACAAAAAAAGACGGAATCTTTATACTCTTCCACTCCCTAACAAGTTTCATCATAGGAATGGAGGTGCAAATGTGCATTACTATGTAGAGGAGAAAGGTGTTGGGAATGGTTCACAGGATGGGTTTTATAGTACACAACTTCCATCTCCTAGAACCAACCCTTCAGACCCAACAACGCCGCCCATGGGTCAGATGATTTTTAGTTATGACAAGGTTTCGGAAATAACCGATGGATTTTCTAGTCAGAACGTGATAGGGGAAGGAGGATTCGGGTATGTTTACAAGGCTTTCATGCCAGACGGTAGAATTGGAGCAGTTAAGCTGCTAAAGGCTGGTGGTGGTCAGGGAGAGAGGGAGTTCAGGGCTGAGGTGGATAGTATCAGCCATATTCATCATCGACATTTGGTATCATTAATGGGTTATTGCATATGCGAACAGAAAAGGGTACTTATCTATGAGTTTGTTCCTAATGGCAATCTTAGTCACCACATGCATGGAAGTGGTGTGCCAGTTTTGAGTTGGGACAAGAGGATGAAGATAGCATTTGGTGCAGCAAGGGGCTTGGCATATCTGCACGAGGGCTGCAACCCAAAGATTATCCACAGAGACATCAAGTCGGCAAACATTCTATTGGATGATGCTTTTGAGGCACAGGTTGCAGACTTTGGACTTGCCAAACTAACCGACGATGCTGATACCCATGTATCAACTAGGGTGATGGGAACCTTCGGGTACATGGCTCCCGAATATGCAACTAGTGGAAAATTAACAGATAGATCAGATGTCTTCTCATTTGGAGTTGTCCTCCTTGAGCTTATAACTGGAAGGAAACCTGTGGATCCAACACAACCTGTGGGAGAAGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGACAGGTGACTTTAGTGAACTAGTGGATCCAAGACTTGAAGGGCAGTACGTTGACAGTGAAATGTTCAGAATAATTGAGGCAGCGGCAGCATGTGTTCGCCATTCTGCTCCAAAACGGCCTCGTATGGTTCAGGTGGCAAGAGCCTTAGACACTGGAGATCAATATGATCTATCTAATGGGGTGAAATATGGTCAAAGCACTGTTTATGATTCTGACCAATACAACAAAGACCTAATGAGATTCAAAAGGATGGCCAATGGCAGTTTTGGTGAATCTGATTCGTATAGTACAGATTACAGATCAAAAGAGATGTCTGCAACCCAATATCAGTGGAGGCAAAGTACTTCTAGTATTGATTCAGAAGCTAAAAATTTCTACAGCCTTAAGAACAGCATTGCTGAGAACAGGTCTTGA 2148 0.4804 MANDNSSNGSPPSNSGNDSPPPTPPSPPSDDSEPPQSSPPKSPPPPSPPNSPPPSPPSNSPPPPSPSQSAPPPPSKSPPPSSSPPPTSPPPPSQSPPPAPKSSSPPSPPNISPPPNISPPPKSPPPQKNSPPPPSQPPLTPPPAAPPPSTPLAPPSNGDSPPPSPSQQSTPPQPQTPPPPSPPPNNTFFPPTPPAPGSNVTPAKTPPPGPVPKSPPVSPSGPHPKPGVTPSSNQFPPSSDDAGDNNNTGKIVGLTIGGVAILAVLALLLILVCRRNKKRRNLYTLPLPNKFHHRNGGANVHYYVEEKGVGNGSQDGFYSTQLPSPRTNPSDPTTPPMGQMIFSYDKVSEITDGFSSQNVIGEGGFGYVYKAFMPDGRIGAVKLLKAGGGQGEREFRAEVDSISHIHHRHLVSLMGYCICEQKRVLIYEFVPNGNLSHHMHGSGVPVLSWDKRMKIAFGAARGLAYLHEGCNPKIIHRDIKSANILLDDAFEAQVADFGLAKLTDDADTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPVGEESLVEWARPLLLRAIETGDFSELVDPRLEGQYVDSEMFRIIEAAAACVRHSAPKRPRMVQVARALDTGDQYDLSNGVKYGQSTVYDSDQYNKDLMRFKRMANGSFGESDSYSTDYRSKEMSATQYQWRQSTSSIDSEAKNFYSLKNSIAENRS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1052 715 MobiDBLite consensus disorder prediction 314 333 - -
Lal23g1052 715 MobiDBLite consensus disorder prediction 15 231 - -
Lal23g1052 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Lal23g1052 715 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1052 715 Gene3D Transferase(Phosphotransferase) domain 1 430 643 - -
Lal23g1052 715 SUPERFAMILY Protein kinase-like (PK-like) 326 627 IPR011009 -
Lal23g1052 715 CDD STKc_IRAK 360 628 - -
Lal23g1052 715 MobiDBLite consensus disorder prediction 1 246 - -
Lal23g1052 715 MobiDBLite consensus disorder prediction 232 246 - -
Lal23g1052 715 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 89 692 - -
Lal23g1052 715 ProSiteProfiles Protein kinase domain profile. 354 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1052 715 Gene3D Phosphorylase Kinase; domain 1 325 429 - -
Lal23g1052 715 Pfam Protein tyrosine and serine/threonine kinase 357 625 IPR001245 GO:0004672|GO:0006468
Lal23g1052 715 PANTHER RECEPTOR-LIKE KINASE 89 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1052 Lal-Chr23 12268550 12273272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1052 88 677 Trihelix Transcription Factor Family AT1G70460 52.097 5.28e-180 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal23g1052 PK_Tyr_Ser-Thr 7.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1052 - - lja:Lj2g3v1414850.1 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1052 23 12268550 12273272 Lal23g1052 23 12268550 12273272 ECH
Lal16g0539 16 3456985 3463450 Lal23g1052 23 12268550 12273272 LSH