Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1041 ATGTCTTCATCATGCCCCGACTGTTTCTCCGACTCTAACGTTGTCTGCAGCGAGGACACAATCGGAATCCTCTCTGGTAATTCGCCGGAATTATACTCCTGTGACATCGATTCCTCGCTGCCGCCGCCGCTGAGGTCACCGGAAGAGGAGGAGTCCATAGCCGGATTCATCGAAAACGAGCGCAACTTTGTTACCAGATCCGATTATCTTTCGAGGTTCTGGTCTCGCTCGCTTGACGATTCCGCCAGAAAAGAATCAGTTGCATGGATTCTCAAGGTGCAGGATTATTACGGTTTTCATCCGCTGACGGCGTATCTTTCCGTCAATTACATGGATCGGTTCTTGAACTCTCGGCAGTTGCCGCAGACAAATGGGTGGGCACTACAACTTATGTCTGTTGCATGCTTGTCTTTAGCGGCAAAGATGGAGGAACCTCTGGTTCCGTCTCTCTTGGACCTTCAGATGAGTTTAGATCCATTAATTAAATTGTATGCCGACTCGGTAGAAGGTCCCAAATACATATTTGAGCCAACAACAATTCGAAGGATGGAGCTACTTGTTCTGGGCGTTTTGGATTGGAGGCTAAGATCTATCACTCCATTTAGCTTCCTCGGTTTATTTGCATGCAAGTTAGATTCAGCTGGAACTTTTACAGGGTCCCTTATTTCACGGGCTACACAAATTATCTTATCTAATGTTGAAGAGACTAGCTTTCTTGCATACTGGCCATCATGCATTGCTGCCGCGGCAATACTATGTGCAGCTAACGAAATTCCTAATTGGTCTCTTGTGAAGCCTGAACATGCCGAGTCATGGTGCGCGGGGTTAAGAAAAGTAAGCAATGAGAAAATTATTGGGTGCTACCAATTAATGCAAAAACTTGTTATTGACAATAACAAGAGGAAGCTTCCTAAAGTGTTGCCACAGCTGCAAGTGACAACCGAGTCCCCAATGAGGTCAAGTGTTTCGTCATCCTCATCATCATTTTCTTCTTCTACTTTCTTCTCGTTGTCTTATAAAAGGAGGAGAATAAATAGTAACCGTTTTTGCGTTGATGGTGAGAAAGAAAACTTACAGTGA 1080 0.4491 MSSSCPDCFSDSNVVCSEDTIGILSGNSPELYSCDIDSSLPPPLRSPEEEESIAGFIENERNFVTRSDYLSRFWSRSLDDSARKESVAWILKVQDYYGFHPLTAYLSVNYMDRFLNSRQLPQTNGWALQLMSVACLSLAAKMEEPLVPSLLDLQMSLDPLIKLYADSVEGPKYIFEPTTIRRMELLVLGVLDWRLRSITPFSFLGLFACKLDSAGTFTGSLISRATQIILSNVEETSFLAYWPSCIAAAAILCAANEIPNWSLVKPEHAESWCAGLRKVSNEKIIGCYQLMQKLVIDNNKRKLPKVLPQLQVTTESPMRSSVSSSSSSFSSSTFFSLSYKRRRINSNRFCVDGEKENLQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1041 359 Pfam Cyclin, C-terminal domain 198 319 IPR004367 -
Lal23g1041 359 ProSitePatterns Cyclins signature. 83 114 IPR006671 -
Lal23g1041 359 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 346 - -
Lal23g1041 359 CDD CYCLIN 83 188 IPR013763 -
Lal23g1041 359 Gene3D - 66 196 - -
Lal23g1041 359 Gene3D - 57 289 - -
Lal23g1041 359 SUPERFAMILY Cyclin-like 46 195 IPR036915 -
Lal23g1041 359 Pfam Cyclin, N-terminal domain 55 195 IPR006671 -
Lal23g1041 359 SMART cyclin_7 88 189 IPR013763 -
Lal23g1041 359 PANTHER CYCLINS 1 346 IPR039361 -
Lal23g1041 359 SMART Cyclin_C_2 198 328 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1041 Lal-Chr23 12175499 12181278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1041 10 316 Core Cell Cycle Gene Families AT1G70210 56.958 2.51e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1041 K18810 - gmx:100775224 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0563 16 3620986 3624604 Lal23g1041 23 12175499 12181278 LSH
Lal15g0505 15 3495550 3500298 Lal23g1041 23 12175499 12181278 LSH