Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1035 ATGGACACCGAAGGATCCGAAGATGTTCATGTTTTGGCCGTTGATGATAGCCTCATTGATCGAAAGTTCATTGAGCGTTTGCTCAAAATCTCAGCTTGTAAAGTTACTACAGTTGATAGTGGAACCAGAGCACTACAATTCCTAGGACTTGATGAGAAGAGAAGAACCCTTGATTCTAATGATGGTTTTGTTGGTTTGAAGGTGGATCTAATTATCACAGACTATTGCATGCCAGGAATGACTGGTTATGAGTTGCTGAAGAAAATCAAGGAATCGTCCACTTTCAGAGAAATTCCTGTGGTGATTATGTCTTCTGAAAACATTTTGCCGCGCATAGATAGATGCTTGGAGGAAGGTGCAGAAGATTTCATAGTGAAGCCAGTGAAGTTATCTGACGTGAAACGGTTGAAGGGTTACATGACCACCAGAGATCTTAAGGTTGGAACCCAAGGCCACGGTGGTGATGATGACCAAGGAGGTGGTGCGGGAATCAACAAAAGAAAAGTGTCGAACACCCCTGATGTGGCATCATCACCACCGTCTATTCTATCACCAATATTATTATCGTCATCATCACCTACTATTATTGAGTCGCCAATTAGACGACTTAATCATATTAATTTTATAAATTCTCCTTTTCACTCCTGCTACAGAGTTCATCATGGGTATGATGTCTACAACTACAAGCATGCCATGTTGCTCAATTGGTATAAGTTTGGATTCTAA 726 0.4105 MDTEGSEDVHVLAVDDSLIDRKFIERLLKISACKVTTVDSGTRALQFLGLDEKRRTLDSNDGFVGLKVDLIITDYCMPGMTGYELLKKIKESSTFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTRDLKVGTQGHGGDDDQGGGAGINKRKVSNTPDVASSPPSILSPILLSSSSPTIIESPIRRLNHINFINSPFHSCYRVHHGYDVYNYKHAMLLNWYKFGF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1035 241 ProSiteProfiles Response regulatory domain profile. 10 141 IPR001789 GO:0000160
Lal23g1035 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 5 198 - -
Lal23g1035 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 198 IPR045279 GO:0009736
Lal23g1035 241 Pfam Response regulator receiver domain 11 133 IPR001789 GO:0000160
Lal23g1035 241 SUPERFAMILY CheY-like 8 135 IPR011006 -
Lal23g1035 241 SMART REC_2 9 140 IPR001789 GO:0000160
Lal23g1035 241 CDD REC_typeA_ARR 11 136 - -
Lal23g1035 241 Gene3D - 9 153 - -
Lal23g1035 241 MobiDBLite consensus disorder prediction 147 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1035 Lal-Chr23 12135004 12137257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1035 6 215 Response Regulator Gene Family AT1G59940 54.338 1.74e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal23g1035 Response_reg 3.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1035 K14492 - gmx:100527828 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1035 23 12135004 12137257 Lal23g1035 23 12135004 12137257 ECH
Lal16g0570 16 3676099 3677865 Lal23g1035 23 12135004 12137257 LSH