Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1029 ATGTCTCGCACGTGCTCACAGTGTGGCAACAACGGCCACAACTCTCGAACCTGCACCGACACCGCCGCAGCATCCGGCGGCGGAGAGTCTCAGAGAGAGAACAGCATCATGTTGTTCGGTGTTCGAGTCACTGAAGGGAAGTCCAATATCTTCAGAAAGAGTGTTAGTATGACCAACCTCTCCCAATATGAACACCAAACCTCTCATGAACCCAACGCTGTTGATGCCGGTTACGTCTCAGACGACGTCGTTCACGCTTCTGGTCGCAGCCGCGAGCGTAAACGAGGTGTTCCATGGACGGAAGAAGAACACAAGTTTTTCTTGTTGGGATTGTCCAAGGTAGGGAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAAACTAGGACACCAACACAGGTGGCTAGTCATGCTCAGAAGTACTTTCTCCGCCTCCACAACCATAGTCGCCGCCGCCGTAGATCTAGCCTCTTTGACATCACCACCTACACGGTGATGAAACCATCAACTATAATGGAAGAAGAAGAAGAACAAGTTGTTGAACAAGAAAAAATGGTGCCACATCCACCTACCTCCGCCACATATCCGTCATCACATTACGGCGCCTCCCCTGGCTCAGCTTTCCCCACGGCACTGTCTCCGGTGGTGTTGCCAGTGACTGAAGGTGAGAGATCAGGCAAGGCTATTAGGCCAACACCGATATTGCCAGTGCCACCATCTTCCAAGATGGCTAGTTTGAACTTGAAAGATAAAACTTCTCGTCTTCCTCTCATTGAGCCACCTCTACCATTGTCACTGAAGCTGCCACCGCTGCCACTATCCAAGGATCAGTCACCAACAACTAGTAGCCACTCTTCATCATCCTCAATAGCTTTTCAGCCAAGGTCTTCAGGGAAGTTCAATGGTGGTAGGGATAATAACATTATTAGTGTTGCTTGA 942 0.4958 MSRTCSQCGNNGHNSRTCTDTAAASGGGESQRENSIMLFGVRVTEGKSNIFRKSVSMTNLSQYEHQTSHEPNAVDAGYVSDDVVHASGRSRERKRGVPWTEEEHKFFLLGLSKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRLHNHSRRRRRSSLFDITTYTVMKPSTIMEEEEEQVVEQEKMVPHPPTSATYPSSHYGASPGSAFPTALSPVVLPVTEGERSGKAIRPTPILPVPPSSKMASLNLKDKTSRLPLIEPPLPLSLKLPPLPLSKDQSPTTSSHSSSSSIAFQPRSSGKFNGGRDNNIISVA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1029 313 MobiDBLite consensus disorder prediction 1 30 - -
Lal23g1029 313 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Lal23g1029 313 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Lal23g1029 313 SMART sant 95 145 IPR001005 -
Lal23g1029 313 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Lal23g1029 313 MobiDBLite consensus disorder prediction 223 313 - -
Lal23g1029 313 MobiDBLite consensus disorder prediction 275 313 - -
Lal23g1029 313 Gene3D - 97 148 - -
Lal23g1029 313 CDD SANT 98 143 IPR001005 -
Lal23g1029 313 SUPERFAMILY Homeodomain-like 93 147 IPR009057 -
Lal23g1029 313 PANTHER TRANSCRIPTION FACTOR KUA1 1 303 - -
Lal23g1029 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Lal23g1029 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Lal23g1029 313 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1029 Lal-Chr23 12098721 12100962 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal23g1029 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1029 - - mtr:MTR_5g037080 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1029 23 12098721 12100962 Lal23g1029 23 12098721 12100962 ECH
Lal16g0578 16 3759707 3762850 Lal23g1029 23 12098721 12100962 LSH