Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1028 ATGCCGTCTCAAGCGGATCTGGACCGCCAGATCGAGGTTCTAATGGAGTGCAAGGCTTTGCCGGAGGCGGAGGTGAAGGCGCTTTGTGATCAGGCAAGGGCGGTTCTGGTGGAGGAGTGGAACGTTCAGCCGGTGAAGTGCCCCGTCACGGTTTGCGGCGATATTCACGGTCAGTTCTACGATCTAATTGAGCTCTTCCGTATTGGTGGAAGTGCTCCTCATACGAATTATCTCTTCATGGGCGATTATGTAGACGGTGAGCTTGGCGCAGCGATAAGGTTGCTGCTTAGTGCCCATGAGGTTATGGGTTCAAATCCTAGAAGCAGTCTCACCACTTGTGAGAGTAAGGCTGCGTACATCTACACTTCACAGACCCCAGTAGATCGTGGGTACTATTCAGTGGAGACTGTTACACTTTTGGTTGCCTTGAAAGTCCGTTATAGAGATAGAATTACAATTCTCAGGGGAAATCATGAGAGCCGTCAAATTACTCAAGTAATGTGTCTGCGAGTTCCATCTATCTTATGGGTAACTTCAAAGGGGGATAGCTTAAGCTCAGCACTTCAGTGGTATGGCTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACTGACTTGTTTGATTATTTACCTCTGACGGCCCTCATTGAGAGTCAGATATTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGACACACTGGATAATATCCGGGCCTTGGATCGTATACAGGAGGTTCCGCATGAAGGACCAATGTGTGATCTCCTTTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAAGATATAGCTGCTCAGTTCAATCATACAAATGGTCTCTCCCTGATATCTAGAGCTCACCAGCTTGTAATGGAAGGTTACAATTGGTGCCAGGAGAAGAATGTGGTGACTGTTTTTAGCGCTCCAAATTACTGTTACCGATGTGGGAATATGGCTGCTATACTGGAAATTGGAGAAAATATGGATCAGAATTTTCTGCAGTTTGATCCGGCTCCCAGGCAAATTGAGCCTGAGACGATGCGAAAGACTCCAGATTATTTTTTGTAA 1122 0.4643 MPSQADLDRQIEVLMECKALPEAEVKALCDQARAVLVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGSAPHTNYLFMGDYVDGELGAAIRLLLSAHEVMGSNPRSSLTTCESKAAYIYTSQTPVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVMCLRVPSILWVTSKGDSLSSALQWYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPETMRKTPDYFL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1028 373 CDD MPP_PP2A_PP4_PP6 6 357 - -
Lal23g1028 373 Pfam Calcineurin-like phosphoesterase 48 306 IPR004843 GO:0016787
Lal23g1028 373 PIRSF PPPtase_5 110 171 - -
Lal23g1028 373 PIRSF PPPtase_5 166 365 - -
Lal23g1028 373 PIRSF PPPtase_5 6 106 - -
Lal23g1028 373 ProSitePatterns Serine/threonine specific protein phosphatases signature. 154 159 IPR006186 GO:0016787
Lal23g1028 373 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 188 373 - -
Lal23g1028 373 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 86 - -
Lal23g1028 373 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 119 168 - -
Lal23g1028 373 SUPERFAMILY Metallo-dependent phosphatases 4 87 IPR029052 -
Lal23g1028 373 Gene3D - 2 373 IPR029052 -
Lal23g1028 373 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 119 168 - -
Lal23g1028 373 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 86 - -
Lal23g1028 373 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 188 373 - -
Lal23g1028 373 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Lal23g1028 373 PRINTS Serine/threonine phosphatase family signature 177 201 IPR006186 GO:0016787
Lal23g1028 373 PRINTS Serine/threonine phosphatase family signature 212 238 IPR006186 GO:0016787
Lal23g1028 373 PRINTS Serine/threonine phosphatase family signature 241 268 IPR006186 GO:0016787
Lal23g1028 373 PRINTS Serine/threonine phosphatase family signature 297 317 IPR006186 GO:0016787
Lal23g1028 373 PRINTS Serine/threonine phosphatase family signature 319 335 IPR006186 GO:0016787
Lal23g1028 373 SUPERFAMILY Metallo-dependent phosphatases 127 360 IPR029052 -
Lal23g1028 373 SMART pp2a_7 20 357 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1028 Lal-Chr23 12093572 12097802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1028 49 292 Calmodulin-binding Proteins AT5G63870 27.758 1.11e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1028 K04382 - gmx:100794029 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1028 23 12093572 12097802 Lal23g1028 23 12093572 12097802 ECH
Lal16g0580 16 3768224 3772776 Lal23g1028 23 12093572 12097802 LSH
Lal15g0521 15 3610625 3614581 Lal23g1028 23 12093572 12097802 LSH