Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1025 ATGGATCCACTCCCTATTATCAACGACAATACGCCACCGTTTCACTTGTCCCAGATCTGGCACTTTCCATCCACGGGTATATCTGAAGAAGAATTTGCTAAGGCTGCTTCCACCACCAATGGCGGTGCTACCAATGCCATGAGTGACGGCGGCAATGGAAAACGGGTGAAGACAATGGGGAGTAGTAGAAATGAGAGTGGTAAAGGTGAAACAGAAATCAGTTCAGGAAAGCATGCGGAACAACAACAAACTACTCCTCCAGAGCCTCATGTTAAGCAAGATTACATCCATGTGAGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGATTTTCTAATGGAATATTGGTGGACCCTATTGGCCAGGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAAATCTTCAGGATTTAGTCCCCGGATGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCACTTCAGCGCCAAGTAGAGTTCTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAGTGACCCCTGGCATTGAAGTATTTCCTCCCAAAGATTTTGATCAGCAAACATTTGATACAGCCGGCATGCCATTTGCTTCCCAAGCTACAAGAGAGTATAGCCGGGGCTCATCACCGGAGTGGTTACATATGCAGGTTGGTGGTTTTGAAAGAACGACATAG 711 0.443 MDPLPIINDNTPPFHLSQIWHFPSTGISEEEFAKAASTTNGGATNAMSDGGNGKRVKTMGSSRNESGKGETEISSGKHAEQQQTTPPEPHVKQDYIHVRARRGQATDSHSLAERFSNGILVDPIGQARREKISERMKNLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVTPGIEVFPPKDFDQQTFDTAGMPFASQATREYSRGSSPEWLHMQVGGFERTT 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1025 236 MobiDBLite consensus disorder prediction 35 91 - -
Lal23g1025 236 Pfam Helix-loop-helix DNA-binding domain 126 167 IPR011598 GO:0046983
Lal23g1025 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 166 IPR011598 GO:0046983
Lal23g1025 236 SMART finulus 126 172 IPR011598 GO:0046983
Lal23g1025 236 MobiDBLite consensus disorder prediction 55 69 - -
Lal23g1025 236 CDD bHLH_AtBPE_like 94 191 - -
Lal23g1025 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 184 IPR036638 GO:0046983
Lal23g1025 236 Coils Coil 163 183 - -
Lal23g1025 236 Gene3D - 102 186 IPR036638 GO:0046983
Lal23g1025 236 PANTHER BNAC05G07950D PROTEIN 41 236 - -
Lal23g1025 236 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 236 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1025 Lal-Chr23 12063198 12066183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1025 1 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.282 6.84e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g1025 HLH 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1025 - - lang:109332242 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1025 23 12063198 12066183 Lal23g1025 23 12063198 12066183 ECH
Lal16g0583 16 3783490 3786498 Lal23g1025 23 12063198 12066183 LSH
Lal15g0523 15 3624365 3629221 Lal23g1025 23 12063198 12066183 LSH