Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1017 ATGAAAGAAGTGAAACCTCAAACACAAAAACAGGTGGTTGGTGGGCGTTCTTCATTTAACTCTGGCAAGGGCAAGAGCCATCAGTCCCCAGCTAAGTATGGTTTTACCCTAGTTAAAGGGAAAGCAAGCCACCCAATGGAGGACTATCATGTAGCAAAATTTGTCCCGTGCAAAGGGCATGAGCTTGGACTTTTTGCTATATACGACGGACACTTGGGAGACAACGTACCATCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAATGAAGCAGACTTCTGGGATGACCCATTCTTGTCCATCTGTAAAGCTTACGAGTCTACAGATCAGGCAATTCTTTCTCACAGTCCGGATTTGGGGCGAGGAGGATCGACTGCAGTCACTGCAATTCTCATAAATAATCAGAAATTATGGGTTGCCAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGGGAGGGGTGGCTGTACCAATGACTACTGATCATGAACCGAATACTGAGCGGGACAGCATTGAGAACAGAGGTGGCTTTGTCTCGAACATGCCTGGAGACGTTGCAAGAGTGAATGGACAACTAGCAGTTTCTCGTGCATTTGGAGACAAAAACCTTAAAATACACTTGCGATCTGATCCTGACATTCGGTTTGAGAACATTACCCCAGATGTTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAATCAAGAGGCTGTTGATATTGCAAGAAGGACAAAGGATCCACAAAAGGCAGCAAAACAGCTAGCTGTTGAAGCATTGAACAGAGAAAGTAAAGATGATATTTCCTGCATTGTCGTTCGTTTCAAGTTCCTTGCAACGTCGACAATGAGCGAGGTTGTAGAACATCATCCTCTGGTTCTCAATTACCACAACGGCCATCTTCTGAAAGGAAGGATCACCGTTAATCTAATCTGGTACGGTTCCTTCACCCCTATCCAACGCTCCATAATCATCGACTTCATCAACTCACTCTCCTCTTCATTTTCCACGTCATCACTCCCCTCCGTCTCATCGTGGTGGAAAACAACACAAAAATACAAACTCCAATCCTCTACTCTCGTCGTAGGAAAACAGTTCCTGCACCCTACCTACACCCTCAGCAAAAACCTCAAAGTAAAAGACCTTATTGCCCTTGCCTCAATGCATAACGATAAATCCTCTATAACCGTCATTCTAACTGCTAAAGACGTTGCAGTTGAAGGCTTCTGTGTTCGTCGGTGTGGGACCCACGGTTCGACCAAGTTCGTTAACGGTGAAGCAAGAAGTGCTTATATTTGGATCGGAAACTCTGAGACTCAGTGTCCGGGGCAATGCGCGTGGCCGTTTCATCAGCCGTTATATGGTCCCCAAACGCCGCCGCTGGTGGCGCCCAACGGTGACGTTGGTGTAGATGGGATTATTATCAACCTGGCTACACTTCTTGCCGGAACCGTCACGAACCCGTTTAATGATGGTTATTTCCAGGGTCCGGCGACGGCGCCGCTCGAGGCAGTTACGGCTTGCAGTGGTGGGTTTGGAAGTGGGTGGTATCCGGGTTATCCGGGTCGGGTTGTTGTGGATAAGGTAACCGGGGCAAGTTTCAATGCGCACGGCTCGAACGGGAGGAAGTATCTATTGCCGGCGATGTGGGACCCAGAGACTCAGGCATGTAGGACTCTGGTGTAA 1698 0.4735 MKEVKPQTQKQVVGGRSSFNSGKGKSHQSPAKYGFTLVKGKASHPMEDYHVAKFVPCKGHELGLFAIYDGHLGDNVPSYLQKHLFSNILNEADFWDDPFLSICKAYESTDQAILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRGGVAVPMTTDHEPNTERDSIENRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKIHLRSDPDIRFENITPDVELLILASDGLWKVMANQEAVDIARRTKDPQKAAKQLAVEALNRESKDDISCIVVRFKFLATSTMSEVVEHHPLVLNYHNGHLLKGRITVNLIWYGSFTPIQRSIIIDFINSLSSSFSTSSLPSVSSWWKTTQKYKLQSSTLVVGKQFLHPTYTLSKNLKVKDLIALASMHNDKSSITVILTAKDVAVEGFCVRRCGTHGSTKFVNGEARSAYIWIGNSETQCPGQCAWPFHQPLYGPQTPPLVAPNGDVGVDGIIINLATLLAGTVTNPFNDGYFQGPATAPLEAVTACSGGFGSGWYPGYPGRVVVDKVTGASFNAHGSNGRKYLLPAMWDPETQACRTLV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1017 565 CDD PP2Cc 32 279 IPR001932 -
Lal23g1017 565 Pfam Phosphate-induced protein 1 conserved region 298 564 IPR006766 -
Lal23g1017 565 ProSiteProfiles PPM-type phosphatase domain profile. 32 279 IPR001932 -
Lal23g1017 565 SUPERFAMILY PP2C-like 30 280 IPR036457 -
Lal23g1017 565 SMART PP2C_SIG_2 43 279 IPR001932 -
Lal23g1017 565 PANTHER PROTEIN PHOSPHATASE 2C 8 280 IPR015655 GO:0004722|GO:0006470
Lal23g1017 565 MobiDBLite consensus disorder prediction 1 31 - -
Lal23g1017 565 SMART PP2C_4 28 277 IPR001932 -
Lal23g1017 565 MobiDBLite consensus disorder prediction 10 27 - -
Lal23g1017 565 Pfam Protein phosphatase 2C 41 272 IPR001932 -
Lal23g1017 565 Gene3D - 27 285 IPR036457 -
Lal23g1017 565 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 8 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1017 Lal-Chr23 12006892 12013073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1017 11 280 PP2C-type Phosphatase Gene Family AT1G22280 71.014 1.84e-135 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1017 K17506 - gmx:100801722 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0598 16 3864334 3865245 Lal23g1017 23 12006892 12013073 LSH
Lal15g0530 15 3693582 3694490 Lal23g1017 23 12006892 12013073 LSH
Lal23g1017 23 12006892 12013073 Lal5g1814 5 19966541 19967452 PCT
Lal5g1814 5 19966541 19967452 Lal23g1017 23 12006892 12013073 PCT