Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1011 ATGAACGGTGGCGGAAACAGAGCAGAGGCGGAGCGGTGGCTCTTCACGGCGAACAAGCTCCTTAGCGCGCGTGATCTGCACGGGGCACGCTCCTTCGCGATCCGAGCGCGTGAATCTGACCCCACTTTCGATGCCTCTGAGCTTCTCGTGACGGTAATCGACACCGTCCTTGCCGGCGAGACTCGGATCAACGACCACCATCGCGACTGGTACGGGATCCTTCAGGTCCTCCGTTACACCACCAACATCGACCACATCGCCGCCCAGTACCGCCGCCTCGCCCTCATCCTCGACCCTCATCGCAACCCCTTCGCTTTATCCAGCCACGCCTTCTCCCTCGTCCACGACGCTTGGTCCGTCCTCTCCGATTCCGTCAAGAAGGCTGCGTACGACAACGATCTCGGATTACTGACTTCCCAAACACCACCGCCTCAACAACCACCACCACCTCCCCAGCCTCAGCCGCAACAAAAGAAAAACTCTAGGTCTAAAATTGTTTCGACCGAACCGGGTCGAAACCCTCGAACCGAGACCGTGACCCAGCCAAACGAGTTAGCTCGGACTGAGTTTGAGGAAGCGAGTTTCTGGACTTCGTGTCCTTACTGTTATGTTATGTATGAGTATCCGAAGGTGTACGAGGAGTGTACCTTACGGTGCCAGAACTGTAGGAGAGGGTTTCATGCTGTGGTGATTCGATCGCCACCGGTGAATGGGTTTGATGAATCCTTTTGCAGTTGGGGTTTTTTACCATTAGTGTTTTCTGGTGATTCGAAAGATATCAATGGGGTTCGTTCTAATTGGAACCCGTTTTCGCCGCTTTTTCCTTGCTCCTTGAAAGGGAATACCAAGAAGAAGAAGGATTGGGTTTATTATGATGATGAGGTTGCGACCGCGTTTATTAACATTTCAGACCCTAGTGAGGATGATTCTGATGGGGACTGGAGAGGTGGAAAAAAGAGGGCGAGTAAGAGGGCAAAGAGTTCCAGGAAGAAATTTTCTGATGTTAAGAGGGAACCTTTACGGAGGCCTAGGAGGAGCCATCATGGTGGAGGTTATGGGAATGAGAATGCGGGTGGTAGTGGTACTGGCAGCGTGGCAGTGGATGGTGTTGCAAGTGCAGGTACAAGTAAGAGGGCACGGCCTGGTAAGAGAGGTGCAGCGGGTGGTCCTAGGAGGAGGGGTGCAGGAAATTTGGGGAAGTTGGACTTGAATGTGGAGTTCAGTAATGACGCGGAAGAACGACAAGAGCCTTCTCGTGCTGGCACGCGTGAAGGCCATCCAACTGGACATGCTGATGATAATATTGAAGGGATTGGTTTTTTTGAGGGTCTTGATGAGTTCCTCAGTAGCTTGCCCATTCTCAATGTCGTGGGAGATGATAAGGTTAAGGGTCATTAG 1398 0.5243 MNGGGNRAEAERWLFTANKLLSARDLHGARSFAIRARESDPTFDASELLVTVIDTVLAGETRINDHHRDWYGILQVLRYTTNIDHIAAQYRRLALILDPHRNPFALSSHAFSLVHDAWSVLSDSVKKAAYDNDLGLLTSQTPPPQQPPPPPQPQPQQKKNSRSKIVSTEPGRNPRTETVTQPNELARTEFEEASFWTSCPYCYVMYEYPKVYEECTLRCQNCRRGFHAVVIRSPPVNGFDESFCSWGFLPLVFSGDSKDINGVRSNWNPFSPLFPCSLKGNTKKKKDWVYYDDEVATAFINISDPSEDDSDGDWRGGKKRASKRAKSSRKKFSDVKREPLRRPRRSHHGGGYGNENAGGSGTGSVAVDGVASAGTSKRARPGKRGAAGGPRRRGAGNLGKLDLNVEFSNDAEERQEPSRAGTREGHPTGHADDNIEGIGFFEGLDEFLSSLPILNVVGDDKVKGH 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1011 465 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 465 - -
Lal23g1011 465 Pfam DnaJ domain 69 131 IPR001623 -
Lal23g1011 465 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Lal23g1011 465 CDD DnaJ 69 123 IPR001623 -
Lal23g1011 465 MobiDBLite consensus disorder prediction 135 183 - -
Lal23g1011 465 MobiDBLite consensus disorder prediction 141 156 - -
Lal23g1011 465 Gene3D DnaJ domain 56 141 IPR036869 -
Lal23g1011 465 SMART dnaj_3 68 126 IPR001623 -
Lal23g1011 465 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 3 465 - -
Lal23g1011 465 SUPERFAMILY Chaperone J-domain 65 133 IPR036869 -
Lal23g1011 465 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Lal23g1011 465 MobiDBLite consensus disorder prediction 305 437 - -
Lal23g1011 465 MobiDBLite consensus disorder prediction 406 431 - -
Lal23g1011 465 MobiDBLite consensus disorder prediction 157 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1011 Lal-Chr23 11970549 11971946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1011 9 464 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 41.401 5.45e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1011 - - gmx:100788733 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0538 15 3725515 3727550 Lal23g1011 23 11970549 11971946 LSH
Lal23g1011 23 11970549 11971946 Lal5g1804 5 19938492 19940117 PCT
Lal23g1011 23 11970549 11971946 Lal3g0042 3 250125 251756 PCT
Lal5g1804 5 19938492 19940117 Lal23g1011 23 11970549 11971946 PCT
Lal3g0042 3 250125 251756 Lal23g1011 23 11970549 11971946 PCT