Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1006 ATGGAAAGAGTGAATTCACAGCAATCATGTGAGAAATTGATGATGGTTCCCATGCAAGTTGATGGGTCCCACTATGCCATTGCCAAAGGAAGTTCAGCTTCAGGTTCTGATGAAGAAGCTCGAGTTAATAGTTTTTCTCGTACCAGTGAACTTACAATTTCATTTCAAGGCGAGGTTTATGTTTTCCCTGCTGTTACCCCACAAAAGGTGCAGGCTGTATTATTACTCTTGGGAGGGCAGGAGATGCCCACTAGTGTTCCCAGCTCCTACTCTTCGTTGCAGCAGAACTATCGGGATATTGGGGGAATAAATGATCCTTCCCAAGGTTCAAAGCGTTCAAGGAGATTTGCATCACTTGCTAGGTTTCGTGAAAAACGAAAAGATAGGTGTTTTGAGAAGAAAATTCGGTACACTTGCCGTAAAGAGGTTGCCGAAAGGATGCATCGTAAGAATGGACAGTTTACATCACTGAAGGAAAACTACAAACCACCTGCAGAAAACTGTGATTCAAGCAATGGTACTCCTTGCCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTGGTGAGAAGTCTACTCCTGCTATGCGTCGAGGACCGGCTGGTCCTAGATCTCTGTGCAATGCATGTGGGCTTATGTGGGCAAACAAGGGAACTTTGAGAGATCTCAGCAAAGCAGGAAAGATTGCTTTTGAACACAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAACAAGAAAATTCTTGTGCTGACCAGGACAAAGAGTATATTATCGAAACTGCTGAAACTGTTACTAACAACTTGTCCATCCAAGTGGAGAATCATGATCTTAGTGTGCGTGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCTGGGACAGAATTTGAAATTCCTGGTGGTTTTGATGAGAATTTATCTGACTTTGTTAAGTTATTGCCTACATCTGTAGGAAGATCTGCTCGTCCAGCTCCACGTGCAGCACCATCTCGACCCGCTCCTCAGCCAGTCAACCGTGCTCCTCCACCAGCTACTGTTCAGAGTGGTGGTGGATCTCTTCTTAGTGGCATTGGTTCAACCATAGCCCAAGGTATGGCTTTTGGCACTGGAAGCGCAGTGGCACACAGGGCTGTGGATGCTGTCATGGGTCCTCGTACTGTCCAACATGAAGCCACTGGTGCTGCTGATCCTGCCCCTGCACCCACTGCAAATACTTTTAGTGGTGATGCATGCAATGTTCATTCAAAGGCATTCCAAGATTGCATTACCAACTATGGAAATGAGATCAGCAAGTGCCAGTTTTACATGGATATGCTAGCTGAGTGCAGAAGGAACTCTGGAGCCTCATTAAATGCATAA 1374 0.4527 MERVNSQQSCEKLMMVPMQVDGSHYAIAKGSSASGSDEEARVNSFSRTSELTISFQGEVYVFPAVTPQKVQAVLLLLGGQEMPTSVPSSYSSLQQNYRDIGGINDPSQGSKRSRRFASLARFREKRKDRCFEKKIRYTCRKEVAERMHRKNGQFTSLKENYKPPAENCDSSNGTPCPESTERRCQHCGIGEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGKIAFEHNELDTSADIKPSTTEQENSCADQDKEYIIETAETVTNNLSIQVENHDLSVREQDTLEDLADASGTEFEIPGGFDENLSDFVKLLPTSVGRSARPAPRAAPSRPAPQPVNRAPPPATVQSGGGSLLSGIGSTIAQGMAFGTGSAVAHRAVDAVMGPRTVQHEATGAADPAPAPTANTFSGDACNVHSKAFQDCITNYGNEISKCQFYMDMLAECRRNSGASLNA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1006 457 Pfam CCT motif 115 156 IPR010402 GO:0005515
Lal23g1006 457 CDD ZnF_GATA 183 226 IPR000679 GO:0006355|GO:0043565
Lal23g1006 457 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 279 315 - -
Lal23g1006 457 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 31 270 - -
Lal23g1006 457 Gene3D - 177 236 IPR013088 GO:0006355|GO:0008270
Lal23g1006 457 Pfam GATA zinc finger 184 220 IPR000679 GO:0006355|GO:0043565
Lal23g1006 457 ProSiteProfiles CCT domain profile. 115 157 IPR010402 GO:0005515
Lal23g1006 457 PANTHER GATA TRANSCRIPTION FACTOR 28 279 315 IPR045280 GO:0006355
Lal23g1006 457 PANTHER GATA TRANSCRIPTION FACTOR 28 31 270 IPR045280 GO:0006355
Lal23g1006 457 MobiDBLite consensus disorder prediction 323 357 - -
Lal23g1006 457 ProSitePatterns GATA-type zinc finger domain. 184 211 IPR000679 GO:0006355|GO:0043565
Lal23g1006 457 MobiDBLite consensus disorder prediction 332 346 - -
Lal23g1006 457 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 232 - -
Lal23g1006 457 ProSiteProfiles Tify domain profile. 44 79 IPR010399 -
Lal23g1006 457 Pfam CHCH domain 416 450 IPR010625 -
Lal23g1006 457 SMART tify_2 44 79 IPR010399 -
Lal23g1006 457 Pfam tify domain 48 78 IPR010399 -
Lal23g1006 457 SMART GATA_3 178 231 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1006 Lal-Chr23 11939351 11948859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1006 50 271 Tify Gene Family AT1G51600 51.965 1.52e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal23g1006 CCT 8.8e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1006 - - gmx:102669848 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0624 16 3998193 4000478 Lal23g1006 23 11939351 11948859 LSH
Lal15g0547 15 3808670 3811213 Lal23g1006 23 11939351 11948859 LSH