Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0998 GTTTTCTCTCATAAATTAGAGGCACTAACATTTAAAGGTGCCAAATCTGAAAGGAGTTTTCTAATGGAGATTTCATCCATCAGAGGGTTAACTGATATGGAAATGATGGAGGATCCTACCTTTCTGCAGTGGCACTTGAGTTCTGTTGATGACCCTGCTGCTGTTTTAAAACATCATCCATTCTATTATCCGAACTTCAACTCCGAAACTTCCATCGATCAGACATCAGACGCACAATTTGTTTCATACCCGAACATTCTTTCATTTGTGGATTCAACTTACATTAATCAGCCGGGGTTAGTAAAGGCGAAGGATGAGATAGTTTGTCCTAAAATCGACAGAACATATCCTCCAAACATGATACACCAAAGAACCTTGGAGATAGGGAATCAAAACTGTGTCTTCAAGGCCTACGAGGATGCCGAAAAGGTCCTGGCACGTCCTAAACTATCTCAACCTCAAGACCACATAATAGCTGAGCGAAAACGGAGAGAGAAGCTCAGCCAGCGTTTCATTGCTCTATCTGCCCTTGTTCCTGCACTACAAAAGATGGACAAAGCTTCTATACTTGGAGGTGCTATAAAGTACTTGAAGCAATTGCAAGAGAAAGTGATGGCTCTTGAGGAGGAAAAGAACAAGAAGAAAAATGTGGAATCTGTGGTAATTGTAAAGAAATGTCAACTACTAAATGATGCTGAAAATTCTTTTTCAGAATCTGGTGATCCCTTTGATGAGGCACTACCTGAGATTGAAGCAAGGTTCTGTGAGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGACTAAAGGAGTTGTAGAAAAAACAATCAATGAAATTGAGAAAATCCATCTGAAAGTCACCAATAGCAGTGCCATGACATTTGGTAGTTGTGCCATTGATATAACAATTCTTGCTCAGATGGATATGGAATTTTGCATTACAGTGAAGGATCTGGTGAGAAACTTACGCTCAGCTTTTGCATCCTTCATGTGA 993 0.4008 VFSHKLEALTFKGAKSERSFLMEISSIRGLTDMEMMEDPTFLQWHLSSVDDPAAVLKHHPFYYPNFNSETSIDQTSDAQFVSYPNILSFVDSTYINQPGLVKAKDEIVCPKIDRTYPPNMIHQRTLEIGNQNCVFKAYEDAEKVLARPKLSQPQDHIIAERKRREKLSQRFIALSALVPALQKMDKASILGGAIKYLKQLQEKVMALEEEKNKKKNVESVVIVKKCQLLNDAENSFSESGDPFDEALPEIEARFCERNVLIRVHCEKTKGVVEKTINEIEKIHLKVTNSSAMTFGSCAIDITILAQMDMEFCITVKDLVRNLRSAFASFM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0998 330 Pfam Helix-loop-helix DNA-binding domain 154 201 IPR011598 GO:0046983
Lal23g0998 330 SMART finulus 157 206 IPR011598 GO:0046983
Lal23g0998 330 PANTHER BHLH TRANSCRIPTION FACTOR 66 329 - -
Lal23g0998 330 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 66 329 - -
Lal23g0998 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 213 IPR036638 GO:0046983
Lal23g0998 330 Gene3D - 147 216 IPR036638 GO:0046983
Lal23g0998 330 Coils Coil 190 217 - -
Lal23g0998 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0998 Lal-Chr23 11870393 11875095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0998 22 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.115 8.01e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g0998 HLH 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0998 - - vun:114179595 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0998 23 11870393 11875095 Lal23g0998 23 11870393 11875095 ECH
Lal23g0998 23 11870393 11875095 Lal3g0050 3 298261 300524 PCT
Lal3g0050 3 298261 300524 Lal23g0998 23 11870393 11875095 PCT