Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal23g0976 | ATGCACACTTTTACTTTCTTCCAACGAGTTTCTAAAGTTTTCCGTAACCATGACTCCCACTTCAAGCTTCTTCTTCTATGCACCACCGTAACCGTAAGTGGTGGTGGGCTTTTGGCATATGGTGATGCTGTTGCTGCATCTGAAGCAGCATCGGTGACAGAGAAGAAGAAGGTGGTGGTACTTGGAACTGGCTGGGCTGGAACAAGTTTCTTGAAGAATCTAAACAACCCAAAATATGATGTTCACGTGGTGTCACCTCGCAACTACTTTACATTCACTCCTTTGCTTCCCAGCGTTACTTGTGGCACAGTCGAGGCCCGCAGCATTGTTGAACCCATTCGCAATATTTTTACCAAGAAAAAGGGGGACATTCAATTCAGTGAAGCTGAATGTCTCAAGATTGATGCAGCAAACAGGAAAGTTTACTGTCGGACTAATATAAGCGAGAACGAGAATGAATTTGTTGTGGACTATGACTACCTTATCATTGCTGTTGGAGCAAATGTCAACACATTCAATACTCCTGGGGTGGTGGAGAATTGTCATTTCCTGAAGGAAGTTGAAGATGCGCAGAAGATTAGAAGAACAGTTATTGACTGCTTTGAGAGAGCAAGTTTGCCTGGTTTAAGTGAAGAAGAGAGGAAGAGGGTTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGACTTTGTTACCGAGGATCTGGTCAAGTTATATCCTGGTATAAAAGATTTAGTTAAAATTACGCTTCTGGAGGCTGGAGATCATATCTTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTCCGAAGAGATGGTATTGATGTGAAAACAGGATCCATGGTTGTGAAGGTATCTGAGAAAGAAATTTCTACTAAATCACTGAAAAATGGAGGAGAAATTGCTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGCATTGGCACTCGTCCATTTGTTAAAGATTTCATGACACAAATTGGTCAGCCAAGAAATTTTACATTGTTACATGATTCACCTGGCATTCACTATTCTGAACAGATTAACAGGCGTGCAGTTGCAACTGATGAATGGTTGAGAGTTGAAGGAACTGACAATGTGTATGCGCTCGGTGATTGTGCTACGATAAACCAGCGAAAAGTCATGGAAGATATTTCTGCAATCTTTAAGAAGGCTGACACAGACAACTCAGGAACACTTACAGTCAAAGAATTCCAAGCTGCATTGAAAGACATCTGTGAAAGATACCCACAGGTGGGACTATATCTTAAGAGTAATCAAATGCGCAACATTGCTGATCTGTTGAAGGAATCCAAGGGAGATATTCAAAAAGAATCTATTGAACTGAACATTGAAGAACTCAAAACCTTACTTTCTAAAGTGGACTCTCAGATGAAATTTCTTCCTGCTACCGCGCAGGTTGCATCTCAACAAGGCACCTACTTGGCCAAGTGTTTTAACCGGATGGAAGACTGTGAAAAAAATCCAGAGGGTCCTCTCAGGTACAGGGGAGAAGGGCGCCACAGGTTCAAACCCTTTAGGTACAGGCATTTAGGTCAGTTTGCTCCTTTGGGAGGAGAACAAACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGCAGTCAATGGCTGTGGTATTCTGTATACGCAAGCAAGCAAGTGAGTTGGCGCACAAGGGCATTAGTAGTAACAGACTGGACAAGACGTTTTATTTTTGGGAGGGACTCAAGTCAGATCTGA | 1791 | 0.4271 | MHTFTFFQRVSKVFRNHDSHFKLLLLCTTVTVSGGGLLAYGDAVAASEAASVTEKKKVVVLGTGWAGTSFLKNLNNPKYDVHVVSPRNYFTFTPLLPSVTCGTVEARSIVEPIRNIFTKKKGDIQFSEAECLKIDAANRKVYCRTNISENENEFVVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERASLPGLSEEERKRVLHFAIVGGGPTGVEFAASLHDFVTEDLVKLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSEKEISTKSLKNGGEIATIPYGMAVWSTGIGTRPFVKDFMTQIGQPRNFTLLHDSPGIHYSEQINRRAVATDEWLRVEGTDNVYALGDCATINQRKVMEDISAIFKKADTDNSGTLTVKEFQAALKDICERYPQVGLYLKSNQMRNIADLLKESKGDIQKESIELNIEELKTLLSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEDCEKNPEGPLRYRGEGRHRFKPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSQI | 596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal23g0976 | 596 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 56 | 397 | IPR023753 | GO:0016491 | |
| Lal23g0976 | 596 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 394 | 429 | IPR002048 | GO:0005509 | |
| Lal23g0976 | 596 | PANTHER | NAD(P)H DEHYDROGENASE B2 | 3 | 596 | - | - | |
| Lal23g0976 | 596 | SMART | efh_1 | 398 | 426 | IPR002048 | GO:0005509 | |
| Lal23g0976 | 596 | SUPERFAMILY | FAD/NAD(P)-binding domain | 213 | 391 | IPR036188 | - | |
| Lal23g0976 | 596 | Coils | Coil | 458 | 478 | - | - | |
| Lal23g0976 | 596 | Gene3D | - | 437 | 595 | - | - | |
| Lal23g0976 | 596 | Gene3D | - | 47 | 425 | - | - | |
| Lal23g0976 | 596 | SUPERFAMILY | FAD/NAD(P)-binding domain | 55 | 271 | IPR036188 | - | |
| Lal23g0976 | 596 | SUPERFAMILY | EF-hand | 389 | 483 | IPR011992 | - | |
| Lal23g0976 | 596 | PANTHER | NADH DEHYDROGENASE | 3 | 596 | IPR045024 | GO:0003954|GO:0006116 | |
| Lal23g0976 | 596 | ProSitePatterns | EF-hand calcium-binding domain. | 407 | 419 | IPR018247 | - | |
| Lal23g0976 | 596 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 30 | 49 | - | - | |
| Lal23g0976 | 596 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 158 | 176 | - | - | |
| Lal23g0976 | 596 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 219 | 237 | - | - | |
| Lal23g0976 | 596 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 366 | 388 | - | - | |
| Lal23g0976 | 596 | Pfam | EF hand | 399 | 425 | IPR002048 | GO:0005509 | |
| Lal23g0976 | 596 | PRINTS | Pyridine nucleotide disulphide reductase class-I signature | 29 | 51 | - | - | |
| Lal23g0976 | 596 | PRINTS | Pyridine nucleotide disulphide reductase class-I signature | 219 | 244 | - | - | |
| Lal23g0976 | 596 | PRINTS | Pyridine nucleotide disulphide reductase class-I signature | 381 | 388 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal23g0976 | Lal-Chr23 | 11749477 | 11756268 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal23g0976 | 1 | 596 | EF-hand Containing Proteins | AT4G05020 | 67.185 | 0.0 | 849 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal23g0976 | K03885 | - | gmx:100800518 | 1009.21 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal23g0976 | 23 | 11749477 | 11756268 | Lal5g1765 | 5 | 19675550 | 19679481 | PCT | |
| Lal5g1765 | 5 | 19675550 | 19679481 | Lal23g0976 | 23 | 11749477 | 11756268 | PCT |