Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0954 ATGGCTCTTCCATGCGATTCTGATGGAATTTGCATGTTCTGCAAAACCAAACCCACAATTCTCGAATCTCTCATTTGCAATACATGCATCACTCCTTGGCACCTTCCTTGTCTTCCCATTACCAATCACCCTTCTAACATTGCCGATTCCCATAAATGGGTTTGCCCTGATTGTCTTATCAATTCCATTCAACCAGTTACTCGCTCCAACCATGACGGTGGTGGTGGTGGTGGTGGTGTTGGTGGCGGTGGTGGTTCTCTTATGGCTGCAGTTCGGGTGATTCAATTGGATACTACATTGACTGATGAACAGAAAGATAAGAAGCGTCAACAGCTTTTGATTGGTTCGTTGAAACTGGCTCATACGAATTTTTCTGAAGAAGATGTGGTGAATAGTGTGCTTCATGTTTTTGATGGAAGTGAGTGTTCTATTTGCATGCAGTTACCTGAAAGACCAGTCACGAGCGATTGGGAAAATGAGGTTTTTGATTTGAGTAGTCTATTGTTAATAGCGATTGCGAAAACTGAGACTCCATGCGGTCATAACTTCTGTCTGAGGTGTTTTGAAAAATGGATTTCACAAGGCAGCAGTAAATGTGCCAATTGCCGTTGCCTATTACCACCAAAGATGGCGAAAAACCCTCGGATCAACTCCCAACTTGCCATTGCCATCCGATTGGCAAAGATGGCAAGATCAGGGTGTGATGTTCCTGGGGGTCCGCCTAAGGTCTATCAGTTTATCCATAATCAAGACCGTCCAGACTCGGCTTTCACCACTGAGAGAGCTAAGAAGCCTGGACTAGCAAATGCTTGCAGTGGGAAGATCCTTGTTACTGTTCCCCAAGACCATTTAGGACCCATCCCTGCTGAGAATGACCCTACAAGGAATCGCGGTGTTCTGGTGGGAGATACCTGGATGAATAGGATGGCTTGTAGACAGTGGGGTGCTCATTTTCCACATATTTCTGGCATTTGTGGCCAGAGTACTTTTGGTGCTCAGTCTGTTGCCCTTTCTGGAGGGTATGTTGACGATGAAGACCACGGCGAGTGGTTCCTCTACACTGGCAGTGGGGGAAGAGATCTCAGTGGCAACAAACGCACTAACAAGAACCAGTCATTCGATCAGAAATTTGAGAACATGAATGAGGCCCTCAGATTAAGTTGCCTAAAGGGCTATCCCGTGCGGGTTGTACGGTCGTCGAAGGAGAAACGTTCTGCTTATGCACCAGATGAAGGAGTCAGATATGACGGAATATATAGAATAGAGAAATGCTGGCGAAAAGTTGGAAAACAAATTTCTCTAAACTTATTCATAGAGGAACTTCTCTGTGATAGGGTTGCAAGTCATGATTGTGGAGACCGCCCACGGCCATTGCCTAAAATTAAGGAATTGAAGGATGCAGTTGATTTAACTGAAAGGAAGGGAGCTCCATCATGGGATTATGATGAAGAAAAGGGCTGCTGGTTGTGGAAGAGGCCTCCACCAGAAAGCAGGAAATTAGCAGGCACTGTAAGCCCTGTGAACGGAAATAGAGGAAAAGTTAAACGAAAACTGAAAACTGCATCTGTGAAAGAAAAGCTACTCAAAGAGTTTGCTTGCCAAATCTGTCGCAAGGTGTTGGCTAACCCTCTTACAACACCTTGTGCTCACAATTTTTGTAAAGCCTGTCTGGAGGGTGTTTTTTCTGGCCAAAGTTTTGTCAGAGAAAGGGTCTACCAAAGTGGACGTTCATTACGTACACAAAAGAACGTCATGAAATGCCCATCATGCCAAAGTGACATAGCTGAGTTCCTGCAAAATCCACAGGTTAACAGACCAATGATGAGTATCATAGAAGCGCTACAGCGCGAGGCTGAACAGATGGAGGAGAACTCTTCGGAGTCAAGTGGCAAGAATGATGAAAATGAGAAGAATGTGAATGATGAGAGTGAAGTTTCAGAGCAGTGTGATTCAAGCGAGGAAGTGTTGGAGGAGAACAAGGCCGGCGATATGAACCAGGCAAAGAAGAAGTTTAGGAAATGTGCTAAAGGTGCAGTTGTGGAGAACAAAGAGGAACATAATGATGAAGCAATTGATGTATAG 2082 0.4491 MALPCDSDGICMFCKTKPTILESLICNTCITPWHLPCLPITNHPSNIADSHKWVCPDCLINSIQPVTRSNHDGGGGGGGVGGGGGSLMAAVRVIQLDTTLTDEQKDKKRQQLLIGSLKLAHTNFSEEDVVNSVLHVFDGSECSICMQLPERPVTSDWENEVFDLSSLLLIAIAKTETPCGHNFCLRCFEKWISQGSSKCANCRCLLPPKMAKNPRINSQLAIAIRLAKMARSGCDVPGGPPKVYQFIHNQDRPDSAFTTERAKKPGLANACSGKILVTVPQDHLGPIPAENDPTRNRGVLVGDTWMNRMACRQWGAHFPHISGICGQSTFGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQKFENMNEALRLSCLKGYPVRVVRSSKEKRSAYAPDEGVRYDGIYRIEKCWRKVGKQISLNLFIEELLCDRVASHDCGDRPRPLPKIKELKDAVDLTERKGAPSWDYDEEKGCWLWKRPPPESRKLAGTVSPVNGNRGKVKRKLKTASVKEKLLKEFACQICRKVLANPLTTPCAHNFCKACLEGVFSGQSFVRERVYQSGRSLRTQKNVMKCPSCQSDIAEFLQNPQVNRPMMSIIEALQREAEQMEENSSESSGKNDENEKNVNDESEVSEQCDSSEEVLEENKAGDMNQAKKKFRKCAKGAVVENKEEHNDEAIDV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0954 693 Pfam RING-type zinc-finger 533 588 IPR027370 -
Lal23g0954 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 641 IPR013083 -
Lal23g0954 693 ProSiteProfiles Zinc finger RING-type profile. 142 203 IPR001841 -
Lal23g0954 693 SUPERFAMILY RING/U-box 135 211 - -
Lal23g0954 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
Lal23g0954 693 ProSitePatterns Zinc finger RING-type signature. 548 557 IPR017907 -
Lal23g0954 693 ProSitePatterns Zinc finger PHD-type signature. 11 58 IPR019786 -
Lal23g0954 693 Pfam Zinc finger, C3HC4 type (RING finger) 142 202 IPR018957 GO:0046872
Lal23g0954 693 SUPERFAMILY FYVE/PHD zinc finger 4 61 IPR011011 -
Lal23g0954 693 Gene3D - 265 437 IPR036987 -
Lal23g0954 693 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 679 IPR045134 -
Lal23g0954 693 MobiDBLite consensus disorder prediction 653 693 - -
Lal23g0954 693 SUPERFAMILY RING/U-box 525 616 - -
Lal23g0954 693 SMART PHD_3 10 59 IPR001965 -
Lal23g0954 693 MobiDBLite consensus disorder prediction 617 693 - -
Lal23g0954 693 SUPERFAMILY PUA domain-like 267 431 IPR015947 -
Lal23g0954 693 MobiDBLite consensus disorder prediction 617 644 - -
Lal23g0954 693 CDD RING-HC 142 202 - -
Lal23g0954 693 SMART G9a_1 289 431 IPR003105 -
Lal23g0954 693 Pfam SAD/SRA domain 297 431 IPR003105 -
Lal23g0954 693 Coils Coil 611 631 - -
Lal23g0954 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 233 IPR013083 -
Lal23g0954 693 SMART ring_2 142 202 IPR001841 -
Lal23g0954 693 SMART ring_2 533 590 IPR001841 -
Lal23g0954 693 ProSiteProfiles YDG domain profile. 294 443 IPR003105 -
Lal23g0954 693 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 679 - -
Lal23g0954 693 ProSiteProfiles Zinc finger RING-type profile. 533 591 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0954 Lal-Chr23 11611488 11616341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0954 3 622 C2H2 Transcription Factor Family AT5G39550 55.134 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0954 K10638 - gmx:100781044 842.032