Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0952 ATGAGTTGCGGCTGCTTTGGAGCCTCAACTCTGAAGAAGAAAAGGAGCACTTCTCGTACTCCTAATGAAAAAGATGGATACCCACTTGATAATGTTAGGCATTTCTCTGATAAAGAACTGAGATTGGCCACTGACAATTATGATATGAGCAAGAAGATCGGACGAGGAGGTTTTGGAACTGTTTTCCGGGGAACCTTAAAAAATCAGAGACAGGTAGCAGTGAAGACCCTTATAGCTGGGTCAAGGCAGGGAGTTCGTGAGTTTTTGGCTGAAATTAATACTCTATCACATGTTAAGCATCCAAACCTTGTTGAATTGATTGGCTGCTGCGTCGAAGGACCAAGTTGTGTATTAGTCTACGAGTACGTGGAAAATAACAGCCTTGATCATGCATTACTTGGCATGAGGACTTCAAACATCAGACTAGACTGGAGACGTAGAGCTGGTATTTGCATTGGTACTGCTAGGGGTCTTGCGTTTCTTCATGAAGAACTTGTCCCACATATTGTGCACAGAGACATCAAAGCTAGCAACGTACTACTTGACGGAGACTTCAATCCAAAAATAGGCGATTTTGGGTTGGCAAAATTATTTCCAGATGACATCACTCACATTAGCACACGAGTTGCTGGAACAACTGGTTACTTAGCACCAGAGTATGCAATGGGTGGGAAATTAACCATGAAGGCTGATGTATATAGCTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGTGCACGAGCTAACTGGGGAGGGTCACATAAATTCCTCTTGGAATGGGCATGGCAACTTCATGAAGAGGGGAAACTATTGGAGCTTGTGGATCCAAACATGGTTGAATATCCTGAGGAAGAGGTAATTAGGTACATGAAGGTAGCTTTCTTCTGCACACAAGCAGCAGCAAGCAGAAGACCACTTATGTCTCAGGTTGTCGATATGCTTTCGAAGAATATCCGCCTCAACGAGAAGCAACTTACAGCACCCGGCTTCTTCCTTGATTCGGGAGAATCGTCAAGAAATAAGTCATCATATGGTGGCTCTACAAGCTATCAATTTAGCTCTACTCCTGTCAGTATAACTCAGATCATCCCAAGGTGA 1107 0.4327 MSCGCFGASTLKKKRSTSRTPNEKDGYPLDNVRHFSDKELRLATDNYDMSKKIGRGGFGTVFRGTLKNQRQVAVKTLIAGSRQGVREFLAEINTLSHVKHPNLVELIGCCVEGPSCVLVYEYVENNSLDHALLGMRTSNIRLDWRRRAGICIGTARGLAFLHEELVPHIVHRDIKASNVLLDGDFNPKIGDFGLAKLFPDDITHISTRVAGTTGYLAPEYAMGGKLTMKADVYSFGVLILEIISGKSSARANWGGSHKFLLEWAWQLHEEGKLLELVDPNMVEYPEEEVIRYMKVAFFCTQAAASRRPLMSQVVDMLSKNIRLNEKQLTAPGFFLDSGESSRNKSSYGGSTSYQFSSTPVSITQIIPR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0952 368 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Lal23g0952 368 PANTHER - 1 358 - -
Lal23g0952 368 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Lal23g0952 368 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lal23g0952 368 Pfam Protein tyrosine and serine/threonine kinase 49 317 IPR001245 GO:0004672|GO:0006468
Lal23g0952 368 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0952 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lal23g0952 368 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 358 - -
Lal23g0952 368 PIRSF ILK 8 329 - -
Lal23g0952 368 CDD STKc_IRAK 53 319 - -
Lal23g0952 368 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0952 368 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Lal23g0952 368 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0952 Lal-Chr23 11599977 11604977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0952 35 367 Receptor kinase-like Gene Family AT1G56120 50.450 3.20e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal23g0952 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0952 - - gmx:100788143 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0952 23 11599977 11604977 Lal23g0952 23 11599977 11604977 ECH
Lal16g0665 16 4323195 4327687 Lal23g0952 23 11599977 11604977 LSH
Lal23g0952 23 11599977 11604977 Lal5g1746 5 19511574 19515300 PCT
Lal5g1746 5 19511574 19515300 Lal23g0952 23 11599977 11604977 PCT