Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0950 ATGTATGTTACTTCCATGCGAAAGTCTTTCAAAGATTCCTTGAAACTCCTTGAAGCTGATATTCAACACGCCAATACCATGGCGTCAGATTTCCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTTTTGGTGCAATGGACTGATTGTCATCTTGCCGGAGCTCTTGGACTGCTACGAATCTTAATTTACAAGGTATATGTGGATGGAACAACAACCATGTCTATTCAAGAAAGACGAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCTTCTTTGATGCAACTTCAAAAAGGTGTTACTGATACGGAGGATAAAAATCAAAAGGCTGTATGCATGGAGAGGTATCGTAGAAGAGATGACGAGGACTATAGACAATGCTCTAACAAAGACATTGAAAGAGAAGACGAATGTGGAATATGCATGGAGATGAATAGTAAGATTGTATTGCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGGGAGTGGCGAACTAGATCACAGTCATGCCCATTTTGCCGCGACAGTCTCAAGAGTGTGAACTCAGGTGATCTCTGGGTATTTACTGATAAAAGGGATGTAGTTGATATGGCAACAGTGACAAGGGAGAATCTTAAAAGGCTTTTCATCTACATAGATAAGTTACCTTTGACTGTTCCAGACTCCCTTTTTGACACTTATGACTCCCACTTGAGGTAA 744 0.4126 MYVTSMRKSFKDSLKLLEADIQHANTMASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSIQERRASIREFYAVIYPSLMQLQKGVTDTEDKNQKAVCMERYRRRDDEDYRQCSNKDIEREDECGICMEMNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKSVNSGDLWVFTDKRDVVDMATVTRENLKRLFIYIDKLPLTVPDSLFDTYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0950 247 SMART ring_2 151 188 IPR001841 -
Lal23g0950 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Lal23g0950 247 SUPERFAMILY RING/U-box 141 194 - -
Lal23g0950 247 PANTHER RING FINGER PROTEIN 41, 151 4 247 - -
Lal23g0950 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lal23g0950 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Lal23g0950 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8-LIKE 4 247 - -
Lal23g0950 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0950 Lal-Chr23 11578293 11583020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0950 99 205 C3H Transcription Factor Family AT5G01960 28.571 4.08e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0950 K25840 - gmx:100777318 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0667 16 4334224 4338965 Lal23g0950 23 11578293 11583020 LSH
Lal15g0611 15 4243526 4246690 Lal23g0950 23 11578293 11583020 LSH