Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0948 ATGTTTGTCTATGATAAATCCCTGATGACCTCGCTCTCACCAACTCCGCCTTCTGTTCACCCTCCGATCTCTCTAATTTCGCCGTCCCCGGTTCCAACAAGCTCTACCTCGCTCTTGTTGGCGATTCCTTCATATACTGGTCATGAAACCATACGCAGTGGCCATATTGCGTTGAATTCCATTCAACGTCGTTGTGTTAAAGTTTCTTCTGCTGAATCCATATCTGTCACTAGATTCTTGCCACCTGACAACTTCAACGTGGCATTGTTAACCCTTGAATTGGACTTCGTTAAAAGGGGGAACCGGAGTGAACAGATTGATGCTGTTCAACTGGCTAACCAACTTAGAAAGAGATTTACAAATCAGGTTATGACAGCAGGGCAGAAAGTGTTATTTGAGTATCACGGAAATAATTATTACTTTACAGTCAGTCAAGCTGCTGTTGAGGGCCAAGAAAAGTCTAAGTCTCTAGAAAGAGGGATGGTTTCAGATGACACATACATTGTTTTTGAAACAGCGCGTGATAGTGGAATTAAGATTGTCAATCAGCGAGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAATTTAATCTTGAGTCTCTGGGCATTGGAGGTCTGAGTGCCGAGTTTGCAGACATATTTCGTAGAGCTTTTGCATCTCGTGTTTTTCCTCCGCATGTTACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGAACTGGAAAGACCCTTATGGCACGTCAAATTGGAAAAATTTTGAACGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAAAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGAGCAGAGGACCCGAGGTGATGAAAGTGATTTGCATGTTATAATCTTTGACGAAATTGATGCTATATGTAAGTCAAGAGGTTCGACTCGAGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCTCTAAATAATGTTTTGCTTATCGGAATGACCAATAGAAAGGACATGCTCGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAGGTTCAGGTTGAGATAAACCTTCCTGATGAAAATGGTAGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAGGAGAATTCCTTTTTGGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGGACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGAAGATCTCACTAAGCCAGTAGAGGAAGAGAATATTAAGGTTACAATGGATGACTTTTTGAATGCACTGCATGAAGTAATTCCTGCATTTGGAGCTTCTACCGACGACCTTGAGAGATGCAGACTCCATGGCATGGTTGACTGTGGTGATCGACACAAACACATTTATCAAAGAGCAATGCTACTTGTAGAGCAAGTTAAAGTGAGTAAAGGCAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCTAGGGGCAGTGGTAAAACTGCACTTGCAGCGACTGTTGGTATTGACAGTGACTTCCCATATGTCAAAATAGTTTCTGCTGAAACGATGATTGGTCTGCAGGAGAGCACTAAATGTGCGCAAATTATTAAGGTTTTTGAGGATGCATACAGATCACCATTGAGTGTCATTGTTCTTGATGACATTGAGAGGTTATTGGAGTATGTGGCAATTGGTCCTCGATTTTCAAACTTGATTTCTCAGACACTACTGGTCCTGCTCAAACGGCTTCCTCCAAAGGGCAAAAAACTCATGGTTATTGGCACAACGAGTGAAGTGGATTTCTTGGAATCCATTGGATTCTGTGATATTTTCTCTGTCACCTACAATGTCCCTACCTTGAATACAAATGATGCAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGAAGATATTGATGCTGCTGCAGAGGTGTTGCGTGATATGCCTATAAGGAAGCTATACATGTTGATTGAGATGGCAGCACAAGGGGAGCAAGGAGGATCTGCAGAAGCTATCTATTCTGGCAAAGATAAGATTAAAATTTCTCATTTCTTTGATTGCCTTCAGGATGTTGTTAGAATATAA 2184 0.4162 MFVYDKSLMTSLSPTPPSVHPPISLISPSPVPTSSTSLLLAIPSYTGHETIRSGHIALNSIQRRCVKVSSAESISVTRFLPPDNFNVALLTLELDFVKRGNRSEQIDAVQLANQLRKRFTNQVMTAGQKVLFEYHGNNYYFTVSQAAVEGQEKSKSLERGMVSDDTYIVFETARDSGIKIVNQREAATSNIFKQKEFNLESLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEINLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALHEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFPYVKIVSAETMIGLQESTKCAQIIKVFEDAYRSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSEVDFLESIGFCDIFSVTYNVPTLNTNDAKKVLEQLNVFADEDIDAAAEVLRDMPIRKLYMLIEMAAQGEQGGSAEAIYSGKDKIKISHFFDCLQDVVRI 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0948 727 MobiDBLite consensus disorder prediction 1 20 - -
Lal23g0948 727 Gene3D - 41 79 - -
Lal23g0948 727 PANTHER BNAA03G50350D PROTEIN 40 726 - -
Lal23g0948 727 Gene3D - 83 180 - -
Lal23g0948 727 PANTHER VESICULAR-FUSION PROTEIN NSF 40 726 IPR039812 GO:0016887|GO:0035494
Lal23g0948 727 CDD AAA 510 636 - -
Lal23g0948 727 Pfam AAA+ lid domain 407 462 IPR041569 -
Lal23g0948 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 479 IPR027417 -
Lal23g0948 727 Pfam Cell division protein 48 (CDC48), domain 2 105 150 IPR004201 -
Lal23g0948 727 SUPERFAMILY Cdc48 domain 2-like 82 185 IPR029067 -
Lal23g0948 727 SMART AAA_5 516 649 IPR003593 -
Lal23g0948 727 SMART AAA_5 236 383 IPR003593 -
Lal23g0948 727 ProSitePatterns AAA-protein family signature. 351 369 IPR003960 GO:0005524|GO:0016887
Lal23g0948 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 691 IPR027417 -
Lal23g0948 727 Gene3D - 189 381 IPR027417 -
Lal23g0948 727 CDD AAA 238 381 - -
Lal23g0948 727 Pfam ATPase family associated with various cellular activities (AAA) 521 634 IPR003959 GO:0005524|GO:0016887
Lal23g0948 727 Pfam ATPase family associated with various cellular activities (AAA) 240 380 IPR003959 GO:0005524|GO:0016887
Lal23g0948 727 Gene3D - 382 469 - -
Lal23g0948 727 Gene3D - 478 649 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0948 Lal-Chr23 11559271 11570998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0948 204 455 Calmodulin-binding Proteins AT3G56690 33.071 5.75e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0948 K06027 - gmx:100779259 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0670 16 4347186 4358281 Lal23g0948 23 11559271 11570998 LSH