LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g0945	ATGGATGATGATAGCAGCAATTCTTGGATTAGGAGGGCAAAATTTTCTCACACAGTATGTCACAGATTGGATTATTCCAGTTTGGGTTCTTTCCCAATCAGGAATTCAGGTTTGAAGTCTAGGCTACCAGAAGATTCAGGTCTGAAATCTAGGCCACCAGAAGATTCAGGTCTGAAATCTAGGACACTAGAAGATTCAGGTCTGAAATCTAGGACACTAGAAGTAGCTCCTCATAATGTAAAGCCTGTTGCTATGGTTTCTCAGGTTCAGAAAAATTTCATAACAAATAAGCAGAGATCCTTATCCCCTTTGCCTGAAACATTTGTTTCTCAAACCTTTAAGGAAGCCAGACATGAACAGAAGAGGTTCTCAACACCAGGTCCACAGAGGAAAGACCAGGATAATAAAATTATGTTTATGGGGAAGTTACCGAACAAGCATTCTCAGGAAATTAAGGTGTCGAATCCAAAATCGCCAATTAAGCACTTCGCTTCAATGAAATCAGGCGACAAGTCAAAGCACCACAAGGAATCAGGATGGGCAAAGTATTTTGATCATGGTGGAGGAAGGGTTACTGCTGTTGAAACAGCTGAAGAATGGACTGTTGACCTCTCTAAGCTGTTTCTGGGTCTTAGGTTTGCTTATGGGGCTCATAGTCGGCTTTACCATGGTATGTATAAAGAGGAACCTGTTGCTGTCAAAATTATCAGGGTACCGGATGAAGATGAAAATGGAACTTTGGCTTCTCGATTAGAGAAACAGTTCATTAGAGAAGTCACACTTTTATCTCGCCTCAACCATCCAAATGTTATCAAGTTCGTGGCAGCTTGTAGAAAGCCTCCCGTTTATTGTGTTATCACAGAATATTTATCAGAAGGTTCTTTGAGGGCATACTTGCATAAGTTGGAGAGAAAAACTGTTTCTCTACAAAAGTTAATTGCTTTTGCGATGGATATTGCTCGTGGAATGGAATACATCCACTCTCAAGGTATCATTCACCGCGACCTTAAACCAGAGAATGTCCTTATCAATGAAGGCTTTCACCTTAGTATAGCTGATTTTGGCATTGCTTGTGAAGAAGCATACTGTGACTTATTAGCGGATGACCCTGGTACATACCGCTGGATGGCACCTGAGATGATCAAACGTAAATCCTATGGGAGAAAGGTTGATGTTTACAGTTTTGGTCTTATCTTATGGGAAATGTTGACCGGAACAATACCATATGAGGATATGACTCCCATCCAAGCTGCCTTTTCCGTAGCAAACAAGAATTCAAGACCTGTTATTCCTTCAAACTGCCCACCTGCTATGCGAGCTTTAATCGAACAATGTTGGTCCTTGCATCCTGACAAAAGGCCAGAGTTCTGGCAGATTATTAAGGTATTAGAGCAATTTGAATCTGCACTCGCTCGTGATGGAACCCTGACTCTAGTGCAAAGTTTGTTATGCCAAGACCATAAAAAGGGTATTCTTCATTGGATGCTGAGGCTTAGTCCTGTAAATCAACATAGTGGTCCTGTTCCAAAACCAAAATTCTCTTGA	1545	0.4123	MDDDSSNSWIRRAKFSHTVCHRLDYSSLGSFPIRNSGLKSRLPEDSGLKSRPPEDSGLKSRTLEDSGLKSRTLEVAPHNVKPVAMVSQVQKNFITNKQRSLSPLPETFVSQTFKEARHEQKRFSTPGPQRKDQDNKIMFMGKLPNKHSQEIKVSNPKSPIKHFASMKSGDKSKHHKESGWAKYFDHGGGRVTAVETAEEWTVDLSKLFLGLRFAYGAHSRLYHGMYKEEPVAVKIIRVPDEDENGTLASRLEKQFIREVTLLSRLNHPNVIKFVAACRKPPVYCVITEYLSEGSLRAYLHKLERKTVSLQKLIAFAMDIARGMEYIHSQGIIHRDLKPENVLINEGFHLSIADFGIACEEAYCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMLTGTIPYEDMTPIQAAFSVANKNSRPVIPSNCPPAMRALIEQCWSLHPDKRPEFWQIIKVLEQFESALARDGTLTLVQSLLCQDHKKGILHWMLRLSPVNQHSGPVPKPKFS	514

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal23g0945	514	ProSiteProfiles	Protein kinase domain profile.	207	467	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal23g0945	514	PRINTS	Tyrosine kinase catalytic domain signature	287	300	IPR001245	GO:0004672\|GO:0006468
	Lal23g0945	514	PRINTS	Tyrosine kinase catalytic domain signature	325	343	IPR001245	GO:0004672\|GO:0006468
	Lal23g0945	514	PRINTS	Tyrosine kinase catalytic domain signature	371	381	IPR001245	GO:0004672\|GO:0006468
	Lal23g0945	514	PRINTS	Tyrosine kinase catalytic domain signature	390	412	IPR001245	GO:0004672\|GO:0006468
	Lal23g0945	514	PRINTS	Tyrosine kinase catalytic domain signature	434	456	IPR001245	GO:0004672\|GO:0006468
	Lal23g0945	514	PANTHER	TYROSINE KINASE FAMILY PROTEIN	4	490	-	-
	Lal23g0945	514	Gene3D	Transferase(Phosphotransferase) domain 1	292	489	-	-
	Lal23g0945	514	SMART	serkin_6	207	466	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal23g0945	514	MobiDBLite	consensus disorder prediction	34	70	-	-
	Lal23g0945	514	CDD	STKc_MAP3K-like	216	463	-	-
	Lal23g0945	514	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	4	490	-	-
	Lal23g0945	514	SUPERFAMILY	Protein kinase-like (PK-like)	192	463	IPR011009	-
	Lal23g0945	514	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	331	343	IPR008271	GO:0004672\|GO:0006468
	Lal23g0945	514	Pfam	Protein tyrosine and serine/threonine kinase	215	463	IPR001245	GO:0004672\|GO:0006468
	Lal23g0945	514	MobiDBLite	consensus disorder prediction	44	68	-	-
	Lal23g0945	514	Gene3D	Phosphorylase Kinase; domain 1	195	291	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal23g0945	Lal-Chr23	11536579	11541238	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal23g0945	3	514	MAP Kinase Kinase Kinase	AT5G58950	56.497	0.0	594

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Lal23g0945		PK_Tyr_Ser-Thr	3.2e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g0945	-		-	lang:109331738	983.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0677	16	4384979	4388394	Lal23g0945	23	11536579	11541238	LSH
	Lal23g0945	23	11536579	11541238	Lal3g0088	3	523752	527485	PCT
	Lal23g0945	23	11536579	11541238	Lal11g0186	11	1301889	1305106	PCT
	Lal3g0088	3	523752	527485	Lal23g0945	23	11536579	11541238	PCT
	Lal11g0186	11	1301889	1305106	Lal23g0945	23	11536579	11541238	PCT