Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0943 ATGGCAACTCTATATTCTCTTTCCTCTCTCTCTCTTCACACCCATTCCCCTTTCTCTCTCTTCCCTAAACCCCACAAACTCACCTTCTTCTCTCTCCTCCCCACAACCCCATCACCTCTCTCCTTCACCGTCAAATCCAAATCCTCCTTCGAAAACGAAACCGATACCACCTTCTTCGACACCGCGAACCCAGAACAAGATTTCCCCTTCGACCCTCCACAGCCCCCAGAAGACTTCATCCCACCACCTTCCATCGACGACGGACCTTTAGAAACCGAAGACGAAATCGCCGCCGCGTACGAAGAATTGTACGGTCCGGCGTACAGCGGGGTAAGCGTTCTGGGCAATGACATACACGTGATGGATTCTAAAGCGAGGAAGGATACTGGGTTCGGTTCGAAAGTGAAGAAGGAGAAGATAAGGGATGGGTTTGAAGAGAGAGTGGTTCAGGTTAGAAGAGTGACTAAGGTTGTTAAAGGAGGGAAACAAATGAGGTTTAGAGCTGTTGTTGTTGTTGGTGATAAGAAAGGAAATGTTGGTGTTGGTGTTGGAAAAGCTAAGGAAGTTATTGCTGCTGTTCAGAAATCTGCTATTGATGCTAGGAGGAATATTATTTCTGTTCCTTTGACCAAGTACTCCACTTTTCCACATAGAGCGGACGGAGATTATGGAGCTGCAAAGGTGATGCTCAGACCGGCTTCTCCTGGTACCGGAGTTATTGCCGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCAGGAGTTGAGAATGCTTTGGGAAAGCAACTTGGAAGTAACAATGCACTCAACAATGCCAGAGCAACTGTTACCGCCGTTCAGAAAATGAGGCAGTTCCGGGAGGTTGCTGAGCAGCGTGGGATCCCAATGGAAGAACTATGGAAGTAA 903 0.4806 MATLYSLSSLSLHTHSPFSLFPKPHKLTFFSLLPTTPSPLSFTVKSKSSFENETDTTFFDTANPEQDFPFDPPQPPEDFIPPPSIDDGPLETEDEIAAAYEELYGPAYSGVSVLGNDIHVMDSKARKDTGFGSKVKKEKIRDGFEERVVQVRRVTKVVKGGKQMRFRAVVVVGDKKGNVGVGVGKAKEVIAAVQKSAIDARRNIISVPLTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVTAVQKMRQFREVAEQRGIPMEELWK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0943 300 Pfam Ribosomal protein S5, C-terminal domain 221 291 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lal23g0943 300 Hamap 30S ribosomal protein S5 [rpsE]. 121 297 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lal23g0943 300 Gene3D - 211 299 IPR014721 -
Lal23g0943 300 TIGRFAM rpsE_bact: ribosomal protein uS5 143 297 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lal23g0943 300 Pfam Ribosomal protein S5, N-terminal domain 144 208 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal23g0943 300 ProSitePatterns Ribosomal protein S5 signature. 161 193 IPR018192 -
Lal23g0943 300 PANTHER RIBOSOMAL S SUBUNIT 48 300 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal23g0943 300 Gene3D - 141 205 - -
Lal23g0943 300 ProSiteProfiles S5 double stranded RNA-binding domain profile. 144 207 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal23g0943 300 SUPERFAMILY dsRNA-binding domain-like 140 209 - -
Lal23g0943 300 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 48 300 - -
Lal23g0943 300 SUPERFAMILY Ribosomal protein S5 domain 2-like 214 292 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0943 Lal-Chr23 11530851 11533975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0943 144 284 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 2.03e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0943 K02988 - gmx:100787105 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0943 23 11530851 11533975 Lal23g0943 23 11530851 11533975 ECH
Lal15g0630 15 4349167 4352131 Lal23g0943 23 11530851 11533975 LSH