Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0942 ATGGATGAGTTTTTGACACCATTTTCCAACCCAACAACCACTATAGCCACCACTGCCTCATGGGTAAGCCACTCACAACAAATAATGGACCATCCCCAAAATGTTCTATTTTCCAGTAATAATGAATCACATCATTTTAATGCTATAACTCCCTCTCCCCCTATGTTGTGTGTTCCACCACCTTACATTGTACCATATGATCAGAACTTGGGGCAACCATTTATGCATATGAATCAGCCTCTTGGTGGTTATCCCATGTATTCCACTTCAGTGGAGCAAAGCAATGGTATTATCCCAACTTATGAACCTCATCAGGGTTTGTTGCAATCAAGGGAAGAAAATATGATGATTAATGAAGCATTGATGGCTAAGTTTGCTAGGTACAGAAGGAAACAAGCAAGACAAAGGATTAGAAGTAGTTCTAATCTTGGGGTCCCTTCAATACCAGAGGGGACAATAAGGGCACAACCTCACGTCACCCATGTTTTCTATGCTCCAGATGGGAAGATGCTCACACAATTTTTGACAAAGACATTGAGAAATAGTGATGTTGGCAACGTTGGACGCATTATTATCCCAAAGAGGGGTGCTGAGGAAATGCTTCCAACCCTCTGCAACAAGAAAGGAACCAATATTCTAGTTCAGGATGTATACTCAGACCTTAAATGGAGTTTCAAATACAAGTACTGGTCTAATAACAAAAGTCATAGAATGTATATTCTTGAGAATACAGTGGATTTTGTTAACCATTACGAATTACGAGTGGGAGATTCTATAACCCTTTACAAGGATGAGTTTACAAATCTGTATGTGTCGGTCAAAAAAGAGCAAAATGTTGAAGAATCTGAGAACTCATCAAGCATAGAAGGGAAAGAAACACATGACACAGAAAATTGCAACTATATGCATTCAGCTTTCTGTACAAACCAAGCTATAGATGAAGAAGAACAAGCATCATTCACTCTACTGTTAAATGAGCTTGGACATGATAGGGATGAACAAGTCACTAATGACATTTTAACCATCTATAATGATTGA 1038 0.3873 MDEFLTPFSNPTTTIATTASWVSHSQQIMDHPQNVLFSSNNESHHFNAITPSPPMLCVPPPYIVPYDQNLGQPFMHMNQPLGGYPMYSTSVEQSNGIIPTYEPHQGLLQSREENMMINEALMAKFARYRRKQARQRIRSSSNLGVPSIPEGTIRAQPHVTHVFYAPDGKMLTQFLTKTLRNSDVGNVGRIIIPKRGAEEMLPTLCNKKGTNILVQDVYSDLKWSFKYKYWSNNKSHRMYILENTVDFVNHYELRVGDSITLYKDEFTNLYVSVKKEQNVEESENSSSIEGKETHDTENCNYMHSAFCTNQAIDEEEQASFTLLLNELGHDRDEQVTNDILTIYND 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0942 345 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 10 342 - -
Lal23g0942 345 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 10 342 IPR044800 GO:0003700
Lal23g0942 345 Pfam B3 DNA binding domain 176 273 IPR003340 GO:0003677
Lal23g0942 345 Gene3D - 164 286 IPR015300 -
Lal23g0942 345 ProSiteProfiles B3 DNA-binding domain profile. 175 277 IPR003340 GO:0003677
Lal23g0942 345 SMART B3_2 175 277 IPR003340 GO:0003677
Lal23g0942 345 CDD B3_DNA 174 275 IPR003340 GO:0003677
Lal23g0942 345 SUPERFAMILY DNA-binding pseudobarrel domain 174 273 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0942 Lal-Chr23 11526803 11529303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0942 167 345 B3 DNA Binding Superfamily AT1G28300 39.106 6.14e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal23g0942 B3 2.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0942 - - lang:109331074 535.028