Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0941 ATGAAGTTCAACATTGCAAACCCCACCACTGGATGCCAGAAGAAGCTGGAAATCGATGATGACCTCAAGCTCCGGGCATTTTGGGACAAAAGGATCTCACAGGAGGTACTTGGCGATGCTCTAGGCGAGGAATTCAAAGGATATGTCTTCAAAATCACTGGAGGATGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGCCGTGTCCGTCTTTTGCTTCATAGAGGGACACCTTGTTTCCGTGGATATGGAAGGCGTACCGGAGAACGTAGGAGAAAGTCTGTTCGTGGTTGCATTGTCAGCCCTGACCTTTCTGTTTTGAACTTGGTAATTGTGAAGAAGGGTGATGATGATTTACCTGGCTTGACTGACATTGAGAAGCCAAGGATGAGGGGTCCAAAGAGAGCATCTAAAATCCGCAAGCTGTTCAACCTGTCCAAGGAAGATGATGTGAGGAAGTATGTTAACACTTACCGTCGTACCTTTACAACTAAAAATGGGAAAAAGGTGAGCAAAGCACCTAAGATTCAACGACTGGTCACTCCTTTGACACTCCAAAGGAAGCGAGCAAGAATAGCAGATAAGAAGAAGAGAATTGCAAAGGCCAAATCAGATGCAGCTGAATATCAAAAGCTCCTTGCCTCCAGGTTGAAGGAGCAGAGGGAACGTCGTAGTGAGAGTTTGGCAAAGAAGAGATCCAGACTTTCCAGTGCCACCAAGCCATCTGTCACAGCATAA 750 0.4653 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGDDDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKKRSRLSSATKPSVTA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0941 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Lal23g0941 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 - -
Lal23g0941 249 MobiDBLite consensus disorder prediction 220 249 - -
Lal23g0941 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lal23g0941 249 Coils Coil 189 216 - -
Lal23g0941 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lal23g0941 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lal23g0941 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lal23g0941 249 MobiDBLite consensus disorder prediction 220 237 - -
Lal23g0941 249 Gene3D - 133 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0941 Lal-Chr23 11520722 11523536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0941 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.092 9.53e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0941 K02991 - gmx:100786559 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0678 16 4389522 4391749 Lal23g0941 23 11520722 11523536 LSH
Lal15g0631 15 4352762 4355376 Lal23g0941 23 11520722 11523536 LSH
Lal23g0941 23 11520722 11523536 Lal5g1725 5 19362857 19365225 PCT
Lal23g0941 23 11520722 11523536 Lal11g0194 11 1377466 1380371 PCT
Lal5g1725 5 19362857 19365225 Lal23g0941 23 11520722 11523536 PCT
Lal11g0194 11 1377466 1380371 Lal23g0941 23 11520722 11523536 PCT