Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0923 ATGGCTTCCTCCAATAAACACTGGCCAAGCATGTTCAAGTCCAAGCCTTACAACCAGTGGCAGCATGATATCAACTCCTCCCTCTTGTCAAATGGTTGTCAAAGAAGCAATTACAATACTTCAGGTTCTGGATGTGATGAGAGGAGTCCTGAACCAAAGCCAAGATGGAATCCAAAACCTGAACAAATCCGCATACTTGAAGCTATTTTCAACTCTGGAATGGTGAACCCTCCAAGGGATGAGATAAGGAAGATCCGGATGCAGTTGCAAGAGTATGGCCAAGTTGGTGATGCCAATGTTTTCTACTGGTTCCAGAACCGGAAATCAAGGAGCAAGAACAAGCTTCGCAACCTTCAGAACTCAAAGAACCAAACCCAACAACAACCACCACCACCACCACAAAACATTAATGCCTCTATCTCTCAAATCACAGCACCTTCTTCTTCTTCATCATCTTCCTCTCCAAAAAATCAAATACTACCCACTAAGGGATTCTCTATTGGCTTCTCAAACACCAATGATATTGGGGTTCCTAATTCCCCTCCCCCTTCTGTGAACCAGACATATTTTCAGACCTTTAATGAGACAAATTTGCTGCCACAACCACCATCTCAGCCTTTCTTTTTTCCTTTACACCAGAATGGGCAAGGAATAGTGGATAATACTAATAATAATTCTGTACCAACACAACAAGGGTTGTGTTTTCCTGATGTATCTAATGTAGTTCATGTTCAGCCTCATCATCCTCAGCTTCATGGTCAACATCAAAATGTTGGGCCTTGCACTAGTATGTTGCTAAATGAGATCCGGAACTATGGTACTAGTACCTTAAAGAAGGACCAAGATCAAGATAAGGGAATGAAGATAATGCATCAACACCCACAACAAAGTTTCCCTCTCATAACATCCACTCCTAATAGTCTCACTACAACCGTTGCTCCTCCCATCACTAATACATCAGTTACTGTTTCATCCAATATTGCTCAACTTCAAGCTGCTAGTACGGCGAAGTCAATGGTGTTCATAAACGAAGTCGCTTTCGAGGTTCCTGTGGGACCCTTTAACGTCCGTGAGGCCTTTGGTGTTGAGGCGGTGCTCCTTTACTCTTCCGGCCATTCTGTTCCGACCGACGACTGGGGTGTCACCCTCCACCCACTCCAACATGGTGGTTCTTATTATCTGCACTATATGGCAGTACTATTATGGTTAGTAATAGTTGCTGAAATTGAGATCATGACTATCAAAGTGTTTTACTTCTGTTAA 1263 0.4299 MASSNKHWPSMFKSKPYNQWQHDINSSLLSNGCQRSNYNTSGSGCDERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKNKLRNLQNSKNQTQQQPPPPPQNINASISQITAPSSSSSSSSPKNQILPTKGFSIGFSNTNDIGVPNSPPPSVNQTYFQTFNETNLLPQPPSQPFFFPLHQNGQGIVDNTNNNSVPTQQGLCFPDVSNVVHVQPHHPQLHGQHQNVGPCTSMLLNEIRNYGTSTLKKDQDQDKGMKIMHQHPQQSFPLITSTPNSLTTTVAPPITNTSVTVSSNIAQLQAASTAKSMVFINEVAFEVPVGPFNVREAFGVEAVLLYSSGHSVPTDDWGVTLHPLQHGGSYYLHYMAVLLWLVIVAEIEIMTIKVFYFC 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0923 420 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Lal23g0923 420 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Lal23g0923 420 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 395 IPR044557 GO:0003700|GO:0050793
Lal23g0923 420 SMART HOX_1 51 118 IPR001356 GO:0003677
Lal23g0923 420 MobiDBLite consensus disorder prediction 119 165 - -
Lal23g0923 420 Gene3D - 53 119 - -
Lal23g0923 420 Coils Coil 108 128 - -
Lal23g0923 420 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 395 - -
Lal23g0923 420 MobiDBLite consensus disorder prediction 31 46 - -
Lal23g0923 420 MobiDBLite consensus disorder prediction 137 165 - -
Lal23g0923 420 CDD homeodomain 52 114 IPR001356 GO:0003677
Lal23g0923 420 SUPERFAMILY Homeodomain-like 47 116 IPR009057 -
Lal23g0923 420 MobiDBLite consensus disorder prediction 31 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0923 Lal-Chr23 11410702 11413425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0923 1 120 Wox Gene Family AT2G33880 80.328 6.85e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal23g0923 Homeodomain 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0923 - - cam:101490093 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0923 23 11410702 11413425 Lal23g0923 23 11410702 11413425 ECH