Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0920 ATGGGGGTTGAAAACAATGAAGATGATCACCCACGTGGTAATTTCCGTGGTACAAGTGCTACGGTCACTCTTGCTACAACTTTGTCTTTAGTTGCTGTCATATTAGTAATTGCTGTTGTCTATTTGTATGCAAGACATCACCTAAGACTCGATCGAAGAAGGCGCCAACAAAACCTTATTCGTCGTATCAACAATCAAATTGCACATGCTGACGACAACTCTACGAGGACACTAAATTCTGGCCTTGACCCTCTTGTCATAGCCTCCTTGCCTAGACTCTTGTACAAGGAAACAAACCAGTTCATCAAAGGTGATGTTATAGAGTGTTCTGTTTGCTTAGGCACTATTGTGGAAGATGAGACAATTAGAGTGTTACCAAATTGTAAGCATGTGTTCCATATTGATTGTGTTGACAAGTGGTTTGCTTCAAATAGTACTTGCCCAGTTTGTCGAGCCGTAGTTGAACCTGCAGTGCAGCCAGGGCTTGATCATGTGGCTACTACAGAGGTCCAACCCACGGCACCGCCGGTTGAGGATGTGTCACATGTTGATGTTAATCGCGAAACGGAAAAGGTGAGTTGTTCAGGCTTGAGAATAGCCTCTTTTCCTAGGATGGTTATTAGCATTGAAAGATCACTGAGAAGGAGCCATGATGGCTCTGCAGCCGTTGAAGATATAGAAAATCAGTGA 690 0.4362 MGVENNEDDHPRGNFRGTSATVTLATTLSLVAVILVIAVVYLYARHHLRLDRRRRQQNLIRRINNQIAHADDNSTRTLNSGLDPLVIASLPRLLYKETNQFIKGDVIECSVCLGTIVEDETIRVLPNCKHVFHIDCVDKWFASNSTCPVCRAVVEPAVQPGLDHVATTEVQPTAPPVEDVSHVDVNRETEKVSCSGLRIASFPRMVISIERSLRRSHDGSAAVEDIENQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0920 229 Coils Coil 53 73 - -
Lal23g0920 229 Pfam Ring finger domain 108 151 IPR001841 -
Lal23g0920 229 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lal23g0920 229 CDD RING-H2_PA-TM-RING 108 151 - -
Lal23g0920 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Lal23g0920 229 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 7 228 - -
Lal23g0920 229 PANTHER RING FINGER DOMAIN-CONTAINING 7 228 - -
Lal23g0920 229 SUPERFAMILY RING/U-box 108 157 - -
Lal23g0920 229 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0920 Lal-Chr23 11384641 11385330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0920 6 215 C3H Transcription Factor Family AT2G42360 35.747 3.03e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0920 K19038 - gmx:100786701 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0920 23 11384641 11385330 Lal23g0920 23 11384641 11385330 ECH