Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0916 ATGGACTTCACCAAGAAGCGCAAAACTGAAGAAAACGGCGACGCCGCTGATTCTCCGCCACAACCACTCCCTACTCCCGCCGCAGTCCTAACCTCCGACGACATCCGCAAGATCCTCCAACCCTTCACCCAAGACCAGCTCCTCGACCTCCTCCAATCAGCCTCCCTCCGCCACCCTGACGTCCTCGACTCCGTCCGCACCCTCGCCGACCGCGACCCGGCCCTCCGCAAACTCTTCGTCCGCGGCCTTTCCGGCGACACCACCACTGACACTCTCCGCGCCGTGTTCTCCGCTTATGGGGAACTCGATGAGGCCATCGTCATCATGGATAAGAACACCGGCAAGTCCAAGGGCTATGGCTTCGTCACGTTCAAGCACGTCGACGGAGCCATCATCGCTCTCAAGGAGCCTAGCAAGAAAATTGACGGAAGGATAACGGTTACTCAGCTTGCTGCTGCTTCGGGGACCGCGACCGCGACCGATGTTTCTGCGAGGAAAGTGTTTGTGGGGAATGTTCCGTTTGATATATCGTCGGAGAGATTGTTGGAACACTTTCTTAGTTTTGGGGAAATTGAAGAAGGGCCGTTAGGGTTTGACAAAGCGAGTGGGAAGACTCGAGGGTTTGCTTTCTTTGTTTACAAGACCGAAGAAGGTGCCAGAGCTTCGCTAGTTGAGCCTGCCAAAACCATTGACGGGCATCAGGTGATTTGCAAATTGGCTGTGGATAACAAGAAGCCGAAACCTGGAGGAGTTCCAGGCCAGACACTGCCTTCAGGGTTTGCAGGGAATGGCATGGCTTTTCAGCAGCAACAGCAGCAACCTTCTATGCAGGCTCCTACAATGGTATCACAGTATGGTGGATATGTTGGTGGTGGAAATGCTAACAGTTATGGGGTTCAGTCTTCAGTGCCTTCATTTGGAAATCCTATACCGGCTAGCGGTGGTGGGTATGGGCATGGAGTTGGCAGTGGTTATGGTAATCCACAATTTGGTGGGCCGGTTTCCAATGACTATGGCACAAGGTTCCCTCCCAATTCTGCTGGAGCGCCTTCTGGGGGATTCCCAGATGGATCACATTACGGTCTTCCTCCAAATCCACAGAATCCACAGCCAATGCCAATGCCAAGACCTCCTCCTGGAGGAATGTACCAAGGCGTGCCGCCTTATTATTGA 1173 0.5388 MDFTKKRKTEENGDAADSPPQPLPTPAAVLTSDDIRKILQPFTQDQLLDLLQSASLRHPDVLDSVRTLADRDPALRKLFVRGLSGDTTTDTLRAVFSAYGELDEAIVIMDKNTGKSKGYGFVTFKHVDGAIIALKEPSKKIDGRITVTQLAAASGTATATDVSARKVFVGNVPFDISSERLLEHFLSFGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARASLVEPAKTIDGHQVICKLAVDNKKPKPGGVPGQTLPSGFAGNGMAFQQQQQQPSMQAPTMVSQYGGYVGGGNANSYGVQSSVPSFGNPIPASGGGYGHGVGSGYGNPQFGGPVSNDYGTRFPPNSAGAPSGGFPDGSHYGLPPNPQNPQPMPMPRPPPGGMYQGVPPYY 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0916 390 Gene3D - 51 157 IPR012677 -
Lal23g0916 390 Gene3D - 158 277 IPR012677 -
Lal23g0916 390 MobiDBLite consensus disorder prediction 328 390 - -
Lal23g0916 390 MobiDBLite consensus disorder prediction 1 25 - -
Lal23g0916 390 SMART rrm1_1 77 149 IPR000504 GO:0003723
Lal23g0916 390 SMART rrm1_1 166 238 IPR000504 GO:0003723
Lal23g0916 390 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 358 - -
Lal23g0916 390 MobiDBLite consensus disorder prediction 362 390 - -
Lal23g0916 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Lal23g0916 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 144 IPR000504 GO:0003723
Lal23g0916 390 PANTHER GEO13361P1-RELATED 1 358 - -
Lal23g0916 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 153 IPR000504 GO:0003723
Lal23g0916 390 SUPERFAMILY RNA-binding domain, RBD 161 257 IPR035979 GO:0003676
Lal23g0916 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 246 IPR000504 GO:0003723
Lal23g0916 390 CDD RRM_RBM24_RBM38_like 76 150 - -
Lal23g0916 390 SUPERFAMILY RNA-binding domain, RBD 68 150 IPR035979 GO:0003676
Lal23g0916 390 CDD RRM_RBM24_RBM38_like 165 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0916 Lal-Chr23 11355607 11360891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0916 148 357 C2H2 Transcription Factor Family AT2G19380 28.936 1.37e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0916 K12741 - gmx:100804230 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0916 23 11355607 11360891 Lal23g0916 23 11355607 11360891 ECH