Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0915 ATGATTTATTCCTCATTATATGACTCAAATCCTTCATCTGAAGCATTTATCAGAGATGGGTTGGCTTCAACTCATTCATTGGTGTTTGAGAGTGAAAAAGGAGAGTTAGTGAAGTGTCCTGAAGAAACTACAAGGGTAGGAAAGAATGAGATTTCTGAGGCCAAAGCTTTGGCAACTTTGAAGAATCATAGTGAAGCAGAAAGGAGGAGAAGGGAGAGAATAAATGCTCATTTTGAAACACTACGTGGTCTAGTACCCTCTACTGAAAAGATGGATAAAGCTACATTGCTGGCTGAAGTTATTAGCCAGGTGAAGGAATTGAAGAAGAATGCACTGGAAGCAAGCAAAGGTCTTATAATCCCAAAGGATTCAAATGAAGTGAAAGTTGAACCATATGATGATGAAGGAGAAGGAGATGGATCAATGTCTTACAAGGCATCTATATGCTGTGATTACACCACTGAGATACTATCTGACCTTAGAAAAACACTTGATGCCCTTAAACTAAAGGTAATGAGGACAGAAATATCAACTTTGGGAAAAAGAATGAAGAATGTGTTTATCTTTAAATGTTGCAAAGGGGACATTACTAACATTGAGGCGTGCCAAGCTCTTCAAATTTCTGTTCAACAGGCACTAAGTTCTGTAGTGGATAAAGCTTCTACCTCATTGGAGTATTTACCAAGAACTTCACATCCAAACAAGAGAAAACTTTGCTCTATTGAAACATCTACTAACTCATGCAACCATGAATCTTGTTCTTGCTGA 768 0.3789 MIYSSLYDSNPSSEAFIRDGLASTHSLVFESEKGELVKCPEETTRVGKNEISEAKALATLKNHSEAERRRRERINAHFETLRGLVPSTEKMDKATLLAEVISQVKELKKNALEASKGLIIPKDSNEVKVEPYDDEGEGDGSMSYKASICCDYTTEILSDLRKTLDALKLKVMRTEISTLGKRMKNVFIFKCCKGDITNIEACQALQISVQQALSSVVDKASTSLEYLPRTSHPNKRKLCSIETSTNSCNHESCSC 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0915 255 Gene3D - 54 116 IPR036638 GO:0046983
Lal23g0915 255 SMART finulus 64 113 IPR011598 GO:0046983
Lal23g0915 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 110 IPR036638 GO:0046983
Lal23g0915 255 PANTHER TRANSCRIPTION FACTOR BHLH30 17 248 IPR045847 GO:0003700|GO:0006355
Lal23g0915 255 PANTHER DNA BINDING PROTEIN-LIKE 17 248 - -
Lal23g0915 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 107 IPR011598 GO:0046983
Lal23g0915 255 Pfam Helix-loop-helix DNA-binding domain 62 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0915 Lal-Chr23 11351188 11354469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0915 42 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 48.980 4.89e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g0915 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0915 - - gmx:100804756 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0915 23 11351188 11354469 Lal23g0915 23 11351188 11354469 ECH