Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0888 ATGTATTCTTCTACTCGCCTCACCTCCGAGCAAGAACTCTCCGTCATTGTCGCGGCCCTCACTAATGTTGTCACCGGTTCCACATCTAACTCAAATGTAATGTCTCAATTCTGCTCACAGGCAACGTCACAAGCCACCGCAGGAGGAGGAACCATCTTCGATCAAAGAATACTACCAACTTCGAACATAGTAACATGCAGTGAATGCAACATCGCAGGGTGCTTAGGCTGTAACTTCTTTCCGGAAGAGAAGAAGTATCAGAAGCAAGCGAAAAAGAAGTACAGGGGAGTGAGGCAGAGACCTTGGGGAAAATGGGCAGCAGAGATTCGAGACCCGAGGCGTGCGGCGCGAGTGTGGCTAGGGACATTCAGCACGGCTCAGGATGCTGCCAGGGCTTATGACAAGGCGGCCATCGAGTTCCGGGGACCGCGGGCCAAGCTCAATTTTCCGGTGATTGATGATTCGCTAAAAGTGGAGGGAAAGAAAGAAAACATGAATGTGATGAGTGATACAATCAAATAG 522 0.5 MYSSTRLTSEQELSVIVAALTNVVTGSTSNSNVMSQFCSQATSQATAGGGTIFDQRILPTSNIVTCSECNIAGCLGCNFFPEEKKYQKQAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFSTAQDAARAYDKAAIEFRGPRAKLNFPVIDDSLKVEGKKENMNVMSDTIK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0888 173 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Lal23g0888 173 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Lal23g0888 173 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 164 - -
Lal23g0888 173 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Lal23g0888 173 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Lal23g0888 173 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Lal23g0888 173 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Lal23g0888 173 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Lal23g0888 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 3 164 - -
Lal23g0888 173 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0888 Lal-Chr23 11160812 11161333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0888 2 153 AP2-EREBP Transcription Factor Family AT4G34410 47.340 2.29e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal23g0888 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0888 - - ccaj:109799734 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0704 15 4881022 4881690 Lal23g0888 23 11160812 11161333 LSH