Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0880 ATGCAAGGTCAAAGAAAGACTACTGGGTCCTTTCAATCAATTGTTAATTTGATGCAAGGGTCTAGTTCTAGTGGCACTGATATGAACCAACAGTCTTCCTTGAATCACATGCAAAACTCTGTAGATTTCCGGCTGTCAGATTATAGGGGTTCTTCTGGTGAGGCTGCATGCTTACGTTCCACCAGTCCTAATGTTCCGAGGTTCAGTGGCTGGAATGCTGGCGAATCAAGTTCTAGACTGAATCTGGTCAACCAAGTCAATGACAGCGGTCTAAAATCAGAACATGTGATGTCTTCTTCGTGTAGTGCTGCCGCTGAGGATTTTCTCAGATCAGAGGAAAGGCAATTTGAACCAAATAATGTGATTTTTCCTGCTAGTTCAAATACTAGTCTGCTTGGGAACCAATCCAGAATTCGGCCTTCCTTTTTGCAAGGTTCCGGCTCTAATCATATAAACCAGAATGTTAGCCTAGACATGGAGCACAATTCTAACACTGCTGACCGTGGGAAGGCAAAAGAAGCCGGTAGTAGTGCCAATAACAGCTATCCAAGTGGATTAGAAAGAGAGCAGACATCATTTGGAAATGCTTCGTTTAATCATATGGGAACTTCATCTGAAAGCTCTGGATACATGGCTTGGGGAGATAGTGCCAGTTCAAGTTCTTCTTTAGTTAATTGGGGCTCTTCCTGCAAGAGGAAGTCCGTCGAAGGTAATTCTAGGCAACTGTGTATTGGCGGAAGCTCAAGCTCATTTGTACAATCTGAAGGTGGTCGTTGGTCTACTGATCCTGCTGATCTTAATTGTTCGAGTAGTTTATGTGTTTCTGCACCTTTACAGGATATCCCTGTTACTGGTCCTTCATTGCCGCAGAGCATAAGAAATGAAGTGAGAGAAGAAGCTTCTAATCCATTTCCTTTGATAAGTTTTGCAGAAAATGTGGAAAGGCCTCTAAGAAACTTTGACAGGAGAATAGCCCAAGTACAGCATCTGGAATCTGTACTTAATCTATCATCACCGGGGAGTGCTAGGCATCTTAGCCATTCTTCTCCACATCAATTACCTGGTTCTCACACATTTAATGATTCTTTGGAATTGAGGTTAACAGCTGGTGTAAATGCTGCCAATTCTGGGGCTCCTCAGAACCAGTCACCTGACGTGGACGTCCGTCCTTTTACTTGGAATAGATCTTCTAGCTCTAGAGGCCCCAGATCTTCAATTTACAATTCTGGAGAAAGAGCAGTCCGGGAAAATTTTAACTTGAGGGTCTTCGCAAGAGACAGTACCGATCACCCAATGAATGTGTCTGCATCTTCAGGACATGAACCTACAGGTTGGCATACGTCGTCTAGTAATGTGAACAACTCTGGAGGTATACCTCCTCCATCCTGGATTGGATCTGGTTCAAATGTCCAATCGTTACCTAACCCCAATTGGATTGTTAACCATGAAGCCCCAACCGAAAATCTGCAGAGATTGTCAGAGTTCAGTCCTTGGTCCCTTTTCCCACCACTTAACACATCATCTGGTGTTCAAAATGGCCATTCTACTCCATCTCCTTCTGGCCCTCTTTCATTCACTCAGGGTTCTAGCAGCAATCAATCATATCCAAGAACAGCATTGTTGACTGAAAGAAGGGGCAATGTTCTCCCTGCTCCTCATTCACTGCGAGGACTAACTGTTGACAATGAGGGGAGACACCGACTATTATCTGAGATTCGCCAAGTCTTGGTTGCAATGCGGAGGGGTGAAAACTTACGAGCTGAGGATTACATGCTCTTTGACCCTTTCATATATCATGGAATGGCTGAGATGCATGACAGGCACAGAGGAATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGCTAGCATTGGAGGAGCGTATAGGAGACGTGAAAACTGGATTGAGTGAGGATGTCATTATAAATTTGATGAAACAGCGAATTTACATGTCTTTCATGACAGAGTCCTCTACAGATTTGGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGAGAAAATATTGGTTCACTAGAATGTGGGCATGAGTTCCACATTAATTGCATCAAGCAGTGGCTAATGCAGAAGAATCTGTGTCCCATTTGCAAAACAACAGCCCTAGCTACATGA 2139 0.4381 MQGQRKTTGSFQSIVNLMQGSSSSGTDMNQQSSLNHMQNSVDFRLSDYRGSSGEAACLRSTSPNVPRFSGWNAGESSSRLNLVNQVNDSGLKSEHVMSSSCSAAAEDFLRSEERQFEPNNVIFPASSNTSLLGNQSRIRPSFLQGSGSNHINQNVSLDMEHNSNTADRGKAKEAGSSANNSYPSGLEREQTSFGNASFNHMGTSSESSGYMAWGDSASSSSSLVNWGSSCKRKSVEGNSRQLCIGGSSSSFVQSEGGRWSTDPADLNCSSSLCVSAPLQDIPVTGPSLPQSIRNEVREEASNPFPLISFAENVERPLRNFDRRIAQVQHLESVLNLSSPGSARHLSHSSPHQLPGSHTFNDSLELRLTAGVNAANSGAPQNQSPDVDVRPFTWNRSSSSRGPRSSIYNSGERAVRENFNLRVFARDSTDHPMNVSASSGHEPTGWHTSSSNVNNSGGIPPPSWIGSGSNVQSLPNPNWIVNHEAPTENLQRLSEFSPWSLFPPLNTSSGVQNGHSTPSPSGPLSFTQGSSSNQSYPRTALLTERRGNVLPAPHSLRGLTVDNEGRHRLLSEIRQVLVAMRRGENLRAEDYMLFDPFIYHGMAEMHDRHRGMRLDVDNMSYEELLALEERIGDVKTGLSEDVIINLMKQRIYMSFMTESSTDLEPCCICQEEYADGENIGSLECGHEFHINCIKQWLMQKNLCPICKTTALAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0880 712 MobiDBLite consensus disorder prediction 429 469 - -
Lal23g0880 712 SUPERFAMILY RING/U-box 646 709 - -
Lal23g0880 712 MobiDBLite consensus disorder prediction 174 189 - -
Lal23g0880 712 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 3 712 - -
Lal23g0880 712 MobiDBLite consensus disorder prediction 430 469 - -
Lal23g0880 712 MobiDBLite consensus disorder prediction 374 410 - -
Lal23g0880 712 SMART ring_2 665 705 IPR001841 -
Lal23g0880 712 MobiDBLite consensus disorder prediction 161 189 - -
Lal23g0880 712 MobiDBLite consensus disorder prediction 339 359 - -
Lal23g0880 712 MobiDBLite consensus disorder prediction 506 536 - -
Lal23g0880 712 Pfam Ring finger domain 665 706 IPR001841 -
Lal23g0880 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 712 IPR045191 GO:0061630
Lal23g0880 712 CDD RING-H2_TTC3 664 706 - -
Lal23g0880 712 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Lal23g0880 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 710 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0880 Lal-Chr23 11110634 11115123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0880 1 712 C3H Transcription Factor Family AT2G15530 36.063 1.89e-108 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0880 - K19041 lang:109330827 1332.78