Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0877 ATGGCTCAGGTTCAGTCTCAGAATGCGATTCAGGGTGGTCCTAATGGTGGTGCTGGTAACCAGTTTGTTACGACGTCGCTTTACGTCGGAGATCTTGACCCAAGCGTAACCGATTCGCAGCTCTATGACCTGTTCAACCAGTTAGGTCAGGTTGTGTCTGTTAGGGTTTGCAGGGACTTAACCACTGGAAGATCACTTGGTTATGGTTATGTCAATTACAGCAATCCCCAAGATGCTGCCAGATCATTGGATGTTCTGAACTTCACTCCTCTCAATAACAAGCCCATACGTATCATGTATTCTCATCGTGATCCCAGTATTCGTAAAAGCGGAGCAGGAAATATTTTCATTAAGAATTTGGACAGGGCAATTGACCACAAGGCATTACATGATACTTTTTCTTCGTTTGGGAGCATCCTTTCTTGCAAGGTGGCTACAGATTCTTCTGGTAACTCGAAAGGCTATGGGTTTGTACAATTTGATAATGAAGAATCTGCTCAAAAAGCCATCGAGAAGTTGAATGGTATGCTGCTGAATGATAAGCAAGTTTACGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAGGTTCAGCTGACAAGGTAAAATTCAACAATGTTTTTGTAAAGAATCTGTCCGAATCAACCACTGATGATGAACTGAAGAAGGTTTTTGGTGAGTTTGGACCAATTACCAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAGGTGCTTTGGATTTGTAAACTTTGAGAATACGGATGATGCTGCTCGGTCTGTTGAGGCTCTTAATGGCAAGAAGTTTGATGACAAAGAGTGGTATGTTGGCAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACTTAAGTTTGAGCAGAGCATTAAGGAAGCCGCAGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGATGATAGCATTAGTGATGAAAAACTTAAGGAGCTGTTCTCCTCTTTCGGTACCATTACCTCTTGCAAGGTTATGAGAGACCCCAATGGCATAAGTCGAGGATCAGGGTTTGTTGCATTCTCAACCCCTGAGGAGGCATCTAGAGCTCTCTTGGATATGAATGGCAAAATGGTGGTCAGCAAACCTCTATATGTGACTCTGGCCCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTTCCCAAATGCGCCCTGTTACAATGGCACCCTCTGTTGCTCCTCGTGTGCCAATGTACCCACCTGGTGGTCCAGGTATTGGTCAACAAATATTTTACGGTCAAGGGCCTCCTGCTATGATTCCTTCCCAGCCTGGATTTGGGTATCAACAGCAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCCATGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGGCAGCGTCCTGGTGGAAGACGTGCAGGTGGAGTCCAGCAGTCCCAGCAGCAAGTTCCTCTAATGCCACAGCAGATGCTTCCTCGGGGACGTGTTTATCGCTATCCTCCTCCTGGTAGGGGTATTCCTGAAGTTCCCATGCCCGGGGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTGAGTGGGATGCCAATGCATGATGCAGGACTCTCCCAGCAAGTTCCTGTTGGAGCTTTGGCTTCTGCTCTGGCAAATGCTTCCCCTGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTCGTGGAACAGTTGGAGCCTGATAATGCTGCCAAGGTAACTGGCATGCTTTTGGAGATGGACCAGACTGAAGTGCTGCACTTGCTCGAGTCACCTGAAGCCCTGAAAGCGAAGGTGGCTGAGGCGATGGACGTCCTGAGGAATGTTGCACAGCAGCAGGCCGGTGGTGCAGCTGATCAGCTGTCTTCATTATCACTCAATGACAACCTTGTTTCTTGA 1941 0.4699 MAQVQSQNAIQGGPNGGAGNQFVTTSLYVGDLDPSVTDSQLYDLFNQLGQVVSVRVCRDLTTGRSLGYGYVNYSNPQDAARSLDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSSFGSILSCKVATDSSGNSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQEREGSADKVKFNNVFVKNLSESTTDDELKKVFGEFGPITSAVVMRDGDGKSRCFGFVNFENTDDAARSVEALNGKKFDDKEWYVGKAQKKSEREHELKLKFEQSIKEAADKYQGANLYVKNLDDSISDEKLKELFSSFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLDMNGKMVVSKPLYVTLAQRKEDRRARLQAQFSQMRPVTMAPSVAPRVPMYPPGGPGIGQQIFYGQGPPAMIPSQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRAGGVQQSQQQVPLMPQQMLPRGRVYRYPPPGRGIPEVPMPGVAGGMFSVPYDVSGMPMHDAGLSQQVPVGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDNLVS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0877 646 CDD RRM1_I_PABPs 26 105 - -
Lal23g0877 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 548 625 IPR002004 GO:0003723
Lal23g0877 646 SMART poly_2 560 623 IPR002004 GO:0003723
Lal23g0877 646 Gene3D - 544 627 - -
Lal23g0877 646 CDD RRM3_I_PABPs 203 282 - -
Lal23g0877 646 SMART rrm2_1 26 99 IPR003954 GO:0003676
Lal23g0877 646 SMART rrm2_1 114 186 IPR003954 GO:0003676
Lal23g0877 646 SMART rrm2_1 205 277 IPR003954 GO:0003676
Lal23g0877 646 SMART rrm2_1 308 380 IPR003954 GO:0003676
Lal23g0877 646 PANTHER POLYADENYLATE-BINDING PROTEIN 14 630 - -
Lal23g0877 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 185 IPR000504 GO:0003723
Lal23g0877 646 Pfam Poly-adenylate binding protein, unique domain 556 620 IPR002004 GO:0003723
Lal23g0877 646 SUPERFAMILY PABC (PABP) domain 488 638 IPR036053 GO:0003723
Lal23g0877 646 Gene3D - 113 186 IPR012677 -
Lal23g0877 646 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 26 621 IPR006515 GO:0003723
Lal23g0877 646 SUPERFAMILY RNA-binding domain, RBD 200 286 IPR035979 GO:0003676
Lal23g0877 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 281 IPR000504 GO:0003723
Lal23g0877 646 MobiDBLite consensus disorder prediction 469 490 - -
Lal23g0877 646 Gene3D - 289 393 IPR012677 -
Lal23g0877 646 SUPERFAMILY RNA-binding domain, RBD 302 400 IPR035979 GO:0003676
Lal23g0877 646 PANTHER RNA BINDING PROTEIN 14 630 - -
Lal23g0877 646 SMART rrm1_1 114 186 IPR000504 GO:0003723
Lal23g0877 646 SMART rrm1_1 308 380 IPR000504 GO:0003723
Lal23g0877 646 SMART rrm1_1 26 99 IPR000504 GO:0003723
Lal23g0877 646 SMART rrm1_1 205 277 IPR000504 GO:0003723
Lal23g0877 646 CDD RRM4_I_PABPs 306 384 - -
Lal23g0877 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Lal23g0877 646 CDD RRM2_I_PABPs 111 187 IPR045305 -
Lal23g0877 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Lal23g0877 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 274 IPR000504 GO:0003723
Lal23g0877 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Lal23g0877 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Lal23g0877 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Lal23g0877 646 Gene3D - 190 288 IPR012677 -
Lal23g0877 646 Gene3D - 1 112 IPR012677 -
Lal23g0877 646 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0877 Lal-Chr23 11089829 11096507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0877 24 645 Eukaryotic Initiation Factors Gene Family AT1G49760 75.158 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0877 K13126 - gmx:100813735 1093.95