LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g0863	ATGGGTAGAGTTCGCACAAAAACAGTGAAGAAATCATCACGTCAAGTGATAGAGAGATATTACTCAAGAATGACATTGGATTTCCATACAAACAAGAAGGTTCTAGAAGAAGTAGCATTAATCCCTTCAAAGAGACTCCGTAATAAGATAGCTGGTTTCTCAACACATTTAATGAAACGTATTCAGAAAGGACCAGTTCGTGGTATTTCTCTCAAACTTCAAGAAGAAGAAAGAGAACGTCGCATGGATTTCGTACCTGATATCTCTGCTATTAACATTGATCATATTGAAGTTGATAAGGAAACTCTTGATATGCTTCATTCTCTTGGTATCACTGATGTTCCTGGTATTGTTCAGGTTGATCCTTCTCCTGTTCAGCCTCAATTTGCCTTTGCTCGCGGTTCTGGTTCTGGTGCTGGTGCTGGTGCTCCTCCTAGGAGGTACTAA	447	0.4004	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDISAINIDHIEVDKETLDMLHSLGITDVPGIVQVDPSPVQPQFAFARGSGSGAGAGAPPRRY	148

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal23g0863	148	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g0863	148	PANTHER	40S RIBOSOMAL PROTEIN S17	1	138	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g0863	148	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g0863	148	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g0863	148	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g0863	148	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g0863	148	PANTHER	40S RIBOSOMAL PROTEIN S17	1	138	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal23g0863	Lal-Chr23	10954524	10954970	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal23g0863	1	148	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	78.378	1.11e-77	225

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g0863	K02962		-	gmx:100527036	238.039