Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0846 ATGGAGAATCAAGCAATTTTAGGTGTTGTTGGAAGAGATGAGGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAGGAGGGTGCATGGAAAGAAACTCAGGTGGAAGAGTTGAAGGATGAGCTTGATGAATTTTCTGTGAAGTTGTTCTTCAAGGGCTTGTCAATAGGTGGGGTTGAAGATTCTATTTCTGGGTTTTCTGGAGTTGGAGTTTTCATGGAAAGACAATCCAGTCTTCCTGTTATTAGAGTGCAGAAAAAACTTGATTTTTATGCCGAGGAGCCACTAGTTGACTACTTGGCTCTAATGGATGGTTTGCTGGAAGCTACACAAAACAAGATGCGCCGTGTCTATGCTTTTACAGATTCTGAGTTGTTGCACAATCAGATAACATGCATGGAAAATCTCGAGGTGCCACTTTTGGTGGCACTGAGAGAAAGGATTCTGCAACTTGCCAATAATTTTGAAGTTTTTTTGCTGAATCTTGTTCCAAGTATAGATCTAGAGCAGGCATTGCAATTAGCCAAAGTAGCAATTGGACTTGTCACTTTTCCTGTAAATGGCGAGAGATTACTTGAAAGTTGTTCTATTTGTTGTGAGGACAGGCCGTTGCCAATTATGATCACCATGAAATGCTCACACAAGTTCTGTTCACATTGCTTGAGGACCTATGCCGATGGAAAAGTGCAATCTTGTCAAGTCCCTATAAGATGTCCACAACCAGGATGCAAATATTGCATCTCTGCTACAGAGTGTAGGTATTTCCTTCCATTTACTTCCTTTGAGTCTTTGGAGAAAGCTCTTTCAGAAGCAAATCTTCTCCATTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCGTGAATGTTTGTCAGCTAGGGCTAGTTCATCTAGTCAGTCAGACAATTCTTGTGTTGAGTGCCCCGTTTGTCAGAGGTTTATCTGTCTGGAATGTAAGGTTCCGTGGCATTCTTCTATGAGATGTGAAGAATTTCAGAATCTGCCAGAGGAGGAGAGAGATACTACTGACATTACTTTGCATCACCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAATGCCGTCGAATGATTGAGCTCACTCATGGTTGTTACCACATGACATGCTGGTGTGGTCATGAGTTTTGTTATTCTTGTGGAGCGGAATACAGGGATGGTCAACAGACATGTCATTGCGCGTTTTGGGATGAAGAGAACTCTGAAGATTCAGTGTCATACTCTCTTCAAGAATCAGAACAATGGGCGTGGGAGACTTTCAATTCTGTCCCCATGCTCATGGACGCATACTCAGACCAAGAACGATCACAGCTTGCACTTATTCAAAGGTTTCTAGATGGTGGTTTTAGTCTTAGTGACCATCACCCTTATGAATCTCCTCCCCGCTACACAGACTCCTATACGGACGCTATGAAGGATTTACATCAGCTTCCATGGCTAGAGAGATTTGCGTCTGTGATAAGTGATGACTATGAAGATTATATTCAATGA 1527 0.4204 MENQAILGVVGRDEEEDEFCSCCEDEEGAWKETQVEELKDELDEFSVKLFFKGLSIGGVEDSISGFSGVGVFMERQSSLPVIRVQKKLDFYAEEPLVDYLALMDGLLEATQNKMRRVYAFTDSELLHNQITCMENLEVPLLVALRERILQLANNFEVFLLNLVPSIDLEQALQLAKVAIGLVTFPVNGERLLESCSICCEDRPLPIMITMKCSHKFCSHCLRTYADGKVQSCQVPIRCPQPGCKYCISATECRYFLPFTSFESLEKALSEANLLHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCQRFICLECKVPWHSSMRCEEFQNLPEEERDTTDITLHHLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCHCAFWDEENSEDSVSYSLQESEQWAWETFNSVPMLMDAYSDQERSQLALIQRFLDGGFSLSDHHPYESPPRYTDSYTDAMKDLHQLPWLERFASVISDDYEDYIQ 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0846 508 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 14 507 - -
Lal23g0846 508 SUPERFAMILY RING/U-box 347 411 - -
Lal23g0846 508 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 14 507 IPR031127 GO:0004842|GO:0016567
Lal23g0846 508 Pfam Reverse transcriptase-like 68 176 IPR002156 GO:0003676|GO:0004523
Lal23g0846 508 ProSiteProfiles Zinc finger RING-type profile. 195 239 IPR001841 -
Lal23g0846 508 ProSiteProfiles TRIAD supradomain profile. 191 409 IPR044066 -
Lal23g0846 508 SUPERFAMILY RING/U-box 194 271 - -
Lal23g0846 508 SMART ibrneu5 262 334 IPR002867 -
Lal23g0846 508 SMART ibrneu5 344 403 IPR002867 -
Lal23g0846 508 Gene3D - 332 488 - -
Lal23g0846 508 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Lal23g0846 508 Pfam IBR domain, a half RING-finger domain 275 334 IPR002867 -
Lal23g0846 508 Pfam IBR domain, a half RING-finger domain 355 403 IPR002867 -
Lal23g0846 508 Gene3D - 47 181 IPR036397 GO:0003676
Lal23g0846 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 274 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0846 Lal-Chr23 10866523 10871621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0846 31 394 C3H Transcription Factor Family AT2G19610 26.804 8.16e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0846 - - gmx:100783040 856.67