Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0841 TCCGCCACGGCATTCCTTAGTGCATGGAGTAAAGCTTGTGTCTCGGCGAAACCAGCCGAAATTCACGTGCCACAAGGGAAGTTTAAGATTGCAGGTCATGTCATCTTCAAAGGGCCTTGTGCCAACAAGGCTATTTCCATAACCATTGATGTATTCAATGGATGCGAGAACGTGAAAATTGAAGGCGTAAAGATCATTGCTGACGGAAATAGCCCTAACACAGACGGCATCCATGTACAAATGTCCTCCAACATCATAATCCTCAAATCCAAAATTAGAACTGGTGATGATTGTATCTCAATAGGCCCCGGTACAAGAAACTTACACATTGAGAATATTGAATGTGGGCCGGGACATGGAATAAGTTACGACTGTCACCGTAACCGTATTATTATGGCTGCATCAGGTGATACGGTTTACAATTTAAATCATTGTTGTAGTCCACACATTGGAAGCTTAGGATGGACTCGGAATGAACCTGGTGTACAGAATGTCACAGTTAGAACAGTTACATTAACTGGGACACAATATGATGTTAGAATAAAGTCTTGGGGGAGACCCTCCAGTGGATTCGTGAAGGAAGTCCTTTTCAAAAATGCAACCATGACCGATGTCCAAAACCCCATTCTTATTGATCAAAATTACTGTCCAAATAATAAGAATTGTCCTGGTCAGGCCTCTGGAGTCAAAATCAGTGATGTTAGGTATGAAGACATTCATGGAACATCTGCAACTCAGGTTGCTATGAAATTTGACTGCAGTTCTACTAATCCATGCATTGGGATAAAGTTGGAGAATGTAAAACTCACTTACAAGAATCAAGTTGCTGAAGCTTCTTGTAAGAATGTTGGTTTAAATATGGAATCAGTTCAACCACAGCATTGCTCGTAA 891 0.4119 SATAFLSAWSKACVSAKPAEIHVPQGKFKIAGHVIFKGPCANKAISITIDVFNGCENVKIEGVKIIADGNSPNTDGIHVQMSSNIIILKSKIRTGDDCISIGPGTRNLHIENIECGPGHGISYDCHRNRIIMAASGDTVYNLNHCCSPHIGSLGWTRNEPGVQNVTVRTVTLTGTQYDVRIKSWGRPSSGFVKEVLFKNATMTDVQNPILIDQNYCPNNKNCPGQASGVKISDVRYEDIHGTSATQVAMKFDCSSTNPCIGIKLENVKLTYKNQVAEASCKNVGLNMESVQPQHCS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0841 296 PANTHER ENDO-POLYGALACTURONASE 51 123 - -
Lal23g0841 296 PANTHER ENDO-POLYGALACTURONASE 2 50 - -
Lal23g0841 296 PANTHER ENDO-POLYGALACTURONASE 149 285 - -
Lal23g0841 296 SUPERFAMILY Pectin lyase-like 3 293 IPR011050 -
Lal23g0841 296 Pfam Glycosyl hydrolases family 28 51 122 IPR000743 GO:0004650|GO:0005975
Lal23g0841 296 Pfam Glycosyl hydrolases family 28 150 284 IPR000743 GO:0004650|GO:0005975
Lal23g0841 296 Gene3D - 47 295 IPR012334 -
Lal23g0841 296 PANTHER - 149 285 - -
Lal23g0841 296 PANTHER - 51 123 - -
Lal23g0841 296 PANTHER - 2 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0841 Lal-Chr23 10809905 10811318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0841 53 295 Glycoside Hydrolase AT3G59850 56.557 3.10e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0841 K01184 - gmx:100806846 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0787 16 5108307 5111193 Lal23g0841 23 10809905 10811318 LSH
Lal15g1536 15 17446458 17451054 Lal23g0841 23 10809905 10811318 LSH