Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0829 CTTGTATCTTCTAAGAACACTATACTCAAACGCCTCCTCCAAAAGTTCCCAAAACTTTTTTCCTTAATCTGTCTCGTAGGTTCTGATCTCACACCCGAAGGGATGGCGGTGTCTGATGGGTCCCCTACCCCACAGATGGTTGGAAATGCTTTTGTGGAACAATATTACTCTATTCTGCATCAAAATCCAGACCAGGTTCACAGGTTTTACCAGGAATCTAGTGTCCTAAGTCGCTCTGAAGAAGATGGTTCCATGACAACCGTGACTAGTATTGCCGACATTAATAAGAAGATACTCTCCCAAGATTATACAAGCTTTAGGGTTGAGATTCTGAGTGCTGATGCTCAGCCTTCATATAAGGACGGAGTAATCGTTCTAGTTACTGGCTACTTAACTGGAAGCGACAATTTGAAAAGGAAGTTTACTCAGTCATTTTTCCTGGCTCCACAGGACAAAGGCTACTTTGTCTTGAATGATGTTTTTAGATATGTTGATGAGTTAAAGTCAGTTGATATTGAGTCTGCTCCTGCAAATGACGCTGAAGAAAGTGCTCCTACAGATGCTTTGGTTCCAGACTCTGAGCCTAATCATGTTCCTGAAAGCATTCTACCCGAACCTATTCAAAATGCTGTTGTGGACACTGATACTGTTGTCAGCAAAGAAGTGAATCAACCAATAGAGAATGGAAAATTATCAGTTGCTGAAAAGGTGGTTCCTGTTAATCATGTGAAAGAGCCAAGTCACCAGGAACATCGCCCAATCATTGAAAAAGCTGCTTCTCCTTCACAGGAGGACCTTCCCAAGAAGTCTTTTGCATCTATTGTGAATGCATTGAAAGAAAATGCTGCTCCCTTCCATGTGAGGGCTTCACCAGTGAAACCTGTAGAGCAACCGCGTGTATCTATTGTGCCTGCACCTGAAACACCAGCGCCTAGCACTGACACTGCATCGGAAAAGAATAAGGAGAATTCAGGTAAAGCTCATGCAATATTTGTTGCAAATTTGTCTATGAATGCTACAGTAGAACAACTGGAACAGGTTTTCAAGAAATTTGGGGCCATTAAACCTGATGGTATTCAAGTTAGAAGTAACAGGCAACAGGGATCTTGTTTTGGCTTTGTGGAATTTGAGTCTGCTACTTCAATGCAAAGTGCACTTGAGGCTTCTCCTCCTATTATTTTGGATAACCGCAAGCTTTCCATCGAAGAAAGGCGAGCCAATAACGACAAGGCTAGATTTTCATCAGGAAGGGGTGGATACCGAAACGACAGAAATGATAACTTCAGGGGCCGTGGAAACTTCGGCGGTGGCCGTGGATACTCTGGTAGAAATGATTTCGAGAAGCGAGGTGAGTTCTCTGGCAGACCTCGAGGCGGTAATAATAATTATGCGCGTAGTAATGGAGAATCTGCCCCCGTCGGTGGTTATCAGAATGGAGGAGGAAAGGCTCCTCGTCAACCAGTGAAAGTTCAATGA 1476 0.4356 LVSSKNTILKRLLQKFPKLFSLICLVGSDLTPEGMAVSDGSPTPQMVGNAFVEQYYSILHQNPDQVHRFYQESSVLSRSEEDGSMTTVTSIADINKKILSQDYTSFRVEILSADAQPSYKDGVIVLVTGYLTGSDNLKRKFTQSFFLAPQDKGYFVLNDVFRYVDELKSVDIESAPANDAEESAPTDALVPDSEPNHVPESILPEPIQNAVVDTDTVVSKEVNQPIENGKLSVAEKVVPVNHVKEPSHQEHRPIIEKAASPSQEDLPKKSFASIVNALKENAAPFHVRASPVKPVEQPRVSIVPAPETPAPSTDTASEKNKENSGKAHAIFVANLSMNATVEQLEQVFKKFGAIKPDGIQVRSNRQQGSCFGFVEFESATSMQSALEASPPIILDNRKLSIEERRANNDKARFSSGRGGYRNDRNDNFRGRGNFGGGRGYSGRNDFEKRGEFSGRPRGGNNNYARSNGESAPVGGYQNGGGKAPRQPVKVQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0829 491 Pfam Nuclear transport factor 2 (NTF2) domain 47 163 IPR002075 -
Lal23g0829 491 MobiDBLite consensus disorder prediction 405 428 - -
Lal23g0829 491 MobiDBLite consensus disorder prediction 459 473 - -
Lal23g0829 491 MobiDBLite consensus disorder prediction 174 196 - -
Lal23g0829 491 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 39 455 IPR039539 -
Lal23g0829 491 CDD NTF2 43 165 IPR018222 -
Lal23g0829 491 PANTHER BNAA02G14660D PROTEIN 39 455 - -
Lal23g0829 491 SUPERFAMILY NTF2-like 43 164 IPR032710 -
Lal23g0829 491 SUPERFAMILY RNA-binding domain, RBD 326 436 IPR035979 GO:0003676
Lal23g0829 491 ProSiteProfiles Nuclear transport factor 2 domain profile. 47 163 IPR018222 -
Lal23g0829 491 Gene3D - 309 417 IPR012677 -
Lal23g0829 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 399 IPR000504 GO:0003723
Lal23g0829 491 MobiDBLite consensus disorder prediction 302 324 - -
Lal23g0829 491 SMART rrm1_1 329 402 IPR000504 GO:0003723
Lal23g0829 491 Gene3D - 36 169 - -
Lal23g0829 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 413 IPR000504 GO:0003723
Lal23g0829 491 MobiDBLite consensus disorder prediction 405 491 - -
Lal23g0829 491 CDD RRM_SF 330 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0829 Lal-Chr23 10740896 10745515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0829 K24983 - gmx:100805610 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0829 23 10740896 10745515 Lal23g0829 23 10740896 10745515 ECH
Lal16g0798 16 5175449 5180006 Lal23g0829 23 10740896 10745515 LSH
Lal15g0772 15 5524533 5528893 Lal23g0829 23 10740896 10745515 LSH