Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0806 ATGGAAGAAATGACAGAACAAATGCAAAACCTGAGATCCAAGGCAACAGAACTTTTCATCAGAGAAGAATGGAAAGACTCCATTGAAGCTTATTCTCATTTTATAACTCTTTCTACACAACACCAAACACCTTCTGATCCAGATCAACTTCAAAAGCTTCACAAATCCATCTGCATTGCATTCTGCAACCGCGCTGAAGCAAGATTCAATTTGGGGTACTTACACTGTGCCTTGCAAGATTGTGAGCATGCTTTGAAGATTGATGGGACCCATTTCAAAACCCTGCTATGTAAAGGTAAGATCTTGCTCAACCTCAATAGGTACCCTTTGGCTCTAGAATGCTTTAGAATTGCACTTGTTGAGTCTCAACCTGGTGGGAACTCTGAAATGCTTAATGGGTATGTGGAGAAATGCAAAAAGTTTGAATTTTTATCAAGAACTGGGTCAATTGATCTCTCAGACTGGGTTGCAAATGGGTTTCAAGGTAAGGTTCCGGAACTTGCTGAACACATTGGTGCAGTTCAGATAAGGAAATCTGAGATCAGTGGGCGTGGCATGTTTGCAACTAAGAACATTGATGCAGGGTCATTGATTTTGGTCACAAAAGCAATAGCCATGGAGAGGAGTATTTTGGGAGGTAAAGATTTGAGTGAGGATGCACAATTAGTGATGTGGAAGAATTTCATTGATAAAGTTGTGGACTTTATTAGGAAATGTAGGAAAACAAGGGTTTTGATTGGTAAGTTGTCAAATGGGGAAGATGAGGAAGGGCTTGAGGTTCCTAATATAGATATCTTTAGACCTGAGACTGAGATTTTGGAGAATATGGAGTCAAAGGGGGAGATTGATATGGGTAAGTTATTTGCCATTTTAGATGTGAATTCTCTCACTGAGGATGCTGTTTCTGCAAATGTGTTGAGAAAGAACAATGATTGCTATGGTGTGGGGCTGTGGTTGCTCCCTTCCTTCATCAACCATTCATGCTGCCCCAATGTGAGGCGGTTGCATGTCGGGGACTACTTGATAGTTCATGCTTCTAAGGATTTGAAGGCTGGTGATGAGATCACTTTGTCGTATTTTGATCCGCTGTGTCCGTTACAGAAGCGAAGGGAGATGTCAATGACATGGGGAATTCATTGTAAGTGTAAGAGATGCATGTTTGAGGAGGAAATGTTCTTGAAACAAGAGATAAAAGAGATTGAGATTGGTCTTGAAAGAGGGATGGAATGTGGTGGGGTAGTGTATAAACTAGAAGAACATATGAAGAGGTGCAATGTGAGGGGGAAAGGAAAAGCCTATTTGAGGGCATCGTTTTGGTCGGCTTATTCGGAGGCTTATCGGTCTGATAGGTGTATGAAGAGGTGGGGAAGGAGAATTCCTGCATTTGATGCTTTGATTGATAGCATCATAGATGTAGTGGGAGGTGATCACAGGTTACTTAAGATCCTGATGGAGGAGTTGAAGAAAAATGGTGGTGGCTTTCTGGAAATGGAGAAGGCTTTGAAGTTGGCAAGAGAGGTGTATGGAAAGGTTGTGAAAAAGAAAGCAATGAGGACACTTCTTGAGCTCTGCACTGATGCTTGA 1584 0.4173 MEEMTEQMQNLRSKATELFIREEWKDSIEAYSHFITLSTQHQTPSDPDQLQKLHKSICIAFCNRAEARFNLGYLHCALQDCEHALKIDGTHFKTLLCKGKILLNLNRYPLALECFRIALVESQPGGNSEMLNGYVEKCKKFEFLSRTGSIDLSDWVANGFQGKVPELAEHIGAVQIRKSEISGRGMFATKNIDAGSLILVTKAIAMERSILGGKDLSEDAQLVMWKNFIDKVVDFIRKCRKTRVLIGKLSNGEDEEGLEVPNIDIFRPETEILENMESKGEIDMGKLFAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCCPNVRRLHVGDYLIVHASKDLKAGDEITLSYFDPLCPLQKRREMSMTWGIHCKCKRCMFEEEMFLKQEIKEIEIGLERGMECGGVVYKLEEHMKRCNVRGKGKAYLRASFWSAYSEAYRSDRCMKRWGRRIPAFDALIDSIIDVVGGDHRLLKILMEELKKNGGGFLEMEKALKLAREVYGKVVKKKAMRTLLELCTDA 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0806 527 Coils Coil 1 21 - -
Lal23g0806 527 Gene3D Tetratricopeptide repeat domain 1 141 IPR011990 GO:0005515
Lal23g0806 527 Pfam SET domain 183 359 IPR001214 GO:0005515
Lal23g0806 527 CDD SET_SMYD 288 385 - -
Lal23g0806 527 SUPERFAMILY TPR-like 7 119 IPR011990 GO:0005515
Lal23g0806 527 SMART set_7 172 366 IPR001214 GO:0005515
Lal23g0806 527 Gene3D SET domain 273 391 IPR046341 -
Lal23g0806 527 SMART tpr_5 58 91 IPR019734 GO:0005515
Lal23g0806 527 SMART tpr_5 92 125 IPR019734 GO:0005515
Lal23g0806 527 SUPERFAMILY SET domain 174 385 IPR046341 -
Lal23g0806 527 ProSiteProfiles SET domain profile. 172 360 IPR001214 GO:0005515
Lal23g0806 527 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 5 517 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal23g0806 SET 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0806 - - mtr:MTR_4g082140 797.349