Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0803 ATGCAAGCAAGTCTTATATTATCTTCACAACAACAACAAAACACAAACTCATCCTCATATTCTTCTCTTTCTCCTTCAATGGGAATGGTCTATGCAGACATGGGTACTCTCTCTCTTTATTCTAAGTGTGGTGCTTCTGTTTCTACATCTCAAGATTGTTGTGCCTCCAATGTGGGTTCAAGCTGGGGCTTTCCATTTATGAGGGAATGTAATATTGTAAGAAACTTTGTGGAGCACCCCAACAACTGTGATATTGTTATGGAAGGTAAAGTGTCTGATTGCAGTGATGGGGTTGGAGAAAACAGTGAGAAAATTAACCATAATGATAACATTAACGAAGAGAACCCTAATGAGAATCTTAGTGGTAAAGAGATTGATACTACTGGCCAGTCCAAACTCTGTGCAAGAGGGCATTGGAGGCCCGCAGAAGATTCCAAGCTCAAGGACCTTGTGGCTCTTTATGGTCCTCAGAACTGGAACCTCATAGCTGAAAAATTAGAAGGAAGATCAGGCAAAAGCTGTAGGCTTAGGTGGTTCAACCAGTTAGACCCAAGGATCAATAGGAGAGCTTTCACTGAAGAAGAGGAAGAAAGGCTAATGCAAGCACATAGGATTTATGGTAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCTAGAAAGTATAGGGAACAATCCAGTGCTTATAGGAGGAGAAGACTGAGCCAGTCTGTTTACAGAAGAATGGATGAAGATACTCCAACCTTTGTATCTAAAGACACAACATTCACTGGGACAGAACCATCACTAACACCATTTTGTCTCAATCTCTCAAATAACTTGGCTAGTTTCTCATATGCATCATCGTCATCTTTCCATGGTAGTGGTGGGGTTGAGTATGGCTTGAATGGCTTACCCAACATGATTGGTGGGAGAGAAGGAATAGTCTCAAGCAGCAAGCAGGTCCCTCCTCATTTTGGCTTTTATGCTCAACAAACTCCATTTGAACTCATATCAGGTGGTAGAAGCAATAATAACCAAACTAGATACTGGGACAACAAACCAAATGATGCAGCAACTCCTCAACTTCAACCACATGGGTTCTACCCTCATTTTAACACATACCTAATGCCAATGCAACAACATCAAAATTACAATAATATTTACAGTTTCACATCAAATTCCACAGTCTCAGTGATGTTGGCCAGTGAAGTTTCATTATCAGCCATGGCAGAACATAGAGATATTGAAGCAGTACTGAGCAGTGACCCCCCTGCAGATGCAATTTCTACACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACAACAACATGA 1362 0.4141 MQASLILSSQQQQNTNSSSYSSLSPSMGMVYADMGTLSLYSKCGASVSTSQDCCASNVGSSWGFPFMRECNIVRNFVEHPNNCDIVMEGKVSDCSDGVGENSEKINHNDNINEENPNENLSGKEIDTTGQSKLCARGHWRPAEDSKLKDLVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRMDEDTPTFVSKDTTFTGTEPSLTPFCLNLSNNLASFSYASSSSFHGSGGVEYGLNGLPNMIGGREGIVSSSKQVPPHFGFYAQQTPFELISGGRSNNNQTRYWDNKPNDAATPQLQPHGFYPHFNTYLMPMQQHQNYNNIYSFTSNSTVSVMLASEVSLSAMAEHRDIEAVLSSDPPADAISTPPFIDFLGVGATTT 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0803 453 SMART sant 135 184 IPR001005 -
Lal23g0803 453 SMART sant 187 235 IPR001005 -
Lal23g0803 453 PANTHER MYB TRANSCRIPTION FACTOR 27 451 - -
Lal23g0803 453 SUPERFAMILY Homeodomain-like 136 229 IPR009057 -
Lal23g0803 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 237 IPR017930 -
Lal23g0803 453 Gene3D - 136 187 - -
Lal23g0803 453 CDD SANT 139 180 IPR001005 -
Lal23g0803 453 Pfam Myb-like DNA-binding domain 136 182 IPR001005 -
Lal23g0803 453 Pfam Myb-like DNA-binding domain 188 231 IPR001005 -
Lal23g0803 453 CDD SANT 190 230 IPR001005 -
Lal23g0803 453 PANTHER MYB PROTEIN-RELATED 27 451 - -
Lal23g0803 453 ProSiteProfiles Myb-like domain profile. 136 182 IPR001005 -
Lal23g0803 453 MobiDBLite consensus disorder prediction 102 123 - -
Lal23g0803 453 Gene3D - 189 257 - -
Lal23g0803 453 MobiDBLite consensus disorder prediction 1 22 - -
Lal23g0803 453 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Lal23g0803 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 182 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0803 Lal-Chr23 10516446 10518256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0803 113 253 MYB Transcription Factor Family AT1G69560 76.316 1.22e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal23g0803 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0803 K09422 - vvi:100253313 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0803 23 10516446 10518256 Lal23g0803 23 10516446 10518256 ECH
Lal16g0828 16 5350448 5352241 Lal23g0803 23 10516446 10518256 LSH
Lal15g0795 15 5806975 5810486 Lal23g0803 23 10516446 10518256 LSH