Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0801 ATGAGCGATCATTTGGTCCTGTATGTGGACCGGCTTGTACCGGTTGAACCGTTGAGTGAACACCCGGTTCAGCCATCTCCTGAGCCTTCGCTGCCAGTGGATGTTGCGGGCCCCTCAGTTTCTGCTTTGGTGGAAAGCGACAGCGACGATGACGGTGAGGAGGAGCCGCTGTTGCAGATGGCGGAGTGTCGCATTTGTCAGGAGGAGGACAGTGTTAGCAATCTAGAGTCTCCCTGCACTTGTAGAGGCAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCAACGAGAAAGGTGACATAACTTGTGAGATATGTCATAAGCCCTATCAACCTGGTTATACTGCCCCGCCACCTTGTCCACGTCCTGAAGAAACTACCATTGATATTGGTGGAGGCTGGAGAATCTCTGGCACACCTTTGGACTTGCATGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTCTTGGAAGCCGAATATGATGGATATGCTGCATCTAATGCCAGTGGAGCTGCATTTTTCCGTTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTTTGTCACGGATGCTGAAGCTGATGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCAGCTGGTTTTCTTTTGCCTTGCTATATCATGGCTTGGGCAATAAGTATTTTGCAGCGCCGGCGACAAAGACAAGAGGCTGCTGCACTGGCTGCAACCCAAGTTGCTTTTGTTCTACAATCCGGGCATCGCAGGGGTCTACAATTTGCCATAGCACCGGGACCAACGGTGCTAAATACACACCAGGAACAAGTGTAG 855 0.5006 MSDHLVLYVDRLVPVEPLSEHPVQPSPEPSLPVDVAGPSVSALVESDSDDDGEEEPLLQMAECRICQEEDSVSNLESPCTCRGSLKYAHRKCVQHWCNEKGDITCEICHKPYQPGYTAPPPCPRPEETTIDIGGGWRISGTPLDLHDPRLLAIAEAERQFLEAEYDGYAASNASGAAFFRSAALILMALLLLRHALFVTDAEADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGHRRGLQFAIAPGPTVLNTHQEQV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0801 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 118 IPR013083 -
Lal23g0801 284 SUPERFAMILY RING/U-box 61 113 - -
Lal23g0801 284 Pfam Protein of unknown function (DUF3675) 114 234 IPR022143 -
Lal23g0801 284 ProSiteProfiles Zinc finger RING-CH-type profile. 55 115 IPR011016 GO:0008270
Lal23g0801 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 272 - -
Lal23g0801 284 CDD RING_CH-C4HC3_MARCH 63 109 - -
Lal23g0801 284 Pfam RING-variant domain 63 108 IPR011016 GO:0008270
Lal23g0801 284 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 272 IPR033275 -
Lal23g0801 284 SMART ringv_2 62 109 IPR011016 GO:0008270
Lal23g0801 284 Coils Coil 151 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0801 Lal-Chr23 10505506 10509622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0801 62 109 C3H Transcription Factor Family AT2G37950 43.137 2.59e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0801 - - ahf:112734090 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0801 23 10505506 10509622 Lal23g0801 23 10505506 10509622 ECH
Lal16g0831 16 5367366 5371274 Lal23g0801 23 10505506 10509622 LSH