Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0800 ATGGACTTGACCCCAACCATATGCAAAGATTCTCAAACCCCACCACCAACCCAACCCATCAATCTCAACCCACCCAAGTCCTTATCTTTTACCAATGCTACACTCAAACCCTACTCCACCACCACCACTAGCGCCATCGTCCCTCCGCCGTCATCCACAGTGGTTTCATACAAAGAATGTCTCAAAAACCATGCTGCCAGCATAGGCGGCCATGCAATTGACGGCTGTGGCGAATTCATGGCTTCTTCCACCGGAATCCTCACCGACCCTCGCTCCCTCGTATGTGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCCGTGACCCTCAAGAACCGCAACCACCACCCACTTTACTTACTTGCTTCTACTCCACCAACCCTTCTTCAGTCACACCCACAGCTCCTCCACCACAACTAACGCCACCACAACTCCCCCACCGTGCCATGAGCCAAAGCACAAGCCCGAGTCTCAGCTCTAGCCCAAGCCACAGTCCTAGCCCCATGTCATCAACCCCTTCATCACCACCACCACTTTCTCACGTGCCACCTTCTTCATATGTAGCACCCCACATGCTCCTAGCATTTGGAAACAACAACAATGCCTATTCTATGGATTATCAAAACAGAAACTTTCACTCTTCTTCATTGGTTCTTAAGACTGAGACCATTAACCTGAGTGGGAAGAAGAGGTACAGAACCAAGTTCAGCCTGGAGCAGAAGGAGAAAATGTTTAGCTTTTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGTGATGATAGATCTGTTCAAGAGTTTTGCAGTGAGATTGGTGTTCCTAGAGGAGTCTTCAAGGTTTGGATGCACAACAACAAGAGCACTTTAAGGAAGAAATCAGACAGTGCTCCTCAAATTGAAAAGACTGATAGTGATAAAGAAGTTGGCAATGGCAATGGTAATGGTGATGGTATTAACAACTCTTTCAACATTAACAACAATGACATTCACAAAAGTGAAGATAATTGTGTTGATAGATCTACCACTTTTAAAGGATTTTATCTTGGAGATAATGCTATTGATGAGTTTGGTGATACATTGCAAGATTCATACCTCCAAATCTAA 1098 0.4608 MDLTPTICKDSQTPPPTQPINLNPPKSLSFTNATLKPYSTTTTSAIVPPPSSTVVSYKECLKNHAASIGGHAIDGCGEFMASSTGILTDPRSLVCAACGCHRNFHRRDPQEPQPPPTLLTCFYSTNPSSVTPTAPPPQLTPPQLPHRAMSQSTSPSLSSSPSHSPSPMSSTPSSPPPLSHVPPSSYVAPHMLLAFGNNNNAYSMDYQNRNFHSSSLVLKTETINLSGKKRYRTKFSLEQKEKMFSFSEKLGWRMQKGDDRSVQEFCSEIGVPRGVFKVWMHNNKSTLRKKSDSAPQIEKTDSDKEVGNGNGNGDGINNSFNINNNDIHKSEDNCVDRSTTFKGFYLGDNAIDEFGDTLQDSYLQI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0800 365 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 36 293 - -
Lal23g0800 365 Gene3D - 219 289 - -
Lal23g0800 365 MobiDBLite consensus disorder prediction 1 16 - -
Lal23g0800 365 MobiDBLite consensus disorder prediction 168 182 - -
Lal23g0800 365 SUPERFAMILY Homeodomain-like 221 289 IPR009057 -
Lal23g0800 365 MobiDBLite consensus disorder prediction 128 182 - -
Lal23g0800 365 MobiDBLite consensus disorder prediction 1 24 - -
Lal23g0800 365 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 228 284 IPR006455 -
Lal23g0800 365 MobiDBLite consensus disorder prediction 287 318 - -
Lal23g0800 365 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 108 IPR006456 -
Lal23g0800 365 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 293 - -
Lal23g0800 365 Pfam ZF-HD protein dimerisation region 55 109 IPR006456 -
Lal23g0800 365 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Lal23g0800 365 MobiDBLite consensus disorder prediction 287 305 - -
Lal23g0800 365 MobiDBLite consensus disorder prediction 144 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0800 Lal-Chr23 10495642 10497239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0800 1 316 ZF-HD Transcription Factor Family AT3G28920 38.050 4.55e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal23g0800 ZF-HD_dimer 7.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0800 - - gmx:102660309 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0832 16 5381709 5383127 Lal23g0800 23 10495642 10497239 LSH
Lal15g0804 15 5855523 5856859 Lal23g0800 23 10495642 10497239 LSH