Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0790 ATGGCTCATGATCATGATGCTAGTATCTCAGATCTTCACCTTGTTCTAGGGTTAGCTTTGACTAGTACGACCCAAAAGGAAACTTTCACTCCATCACCACAATCCAACAAGGTTGTTGATGATCATTTAACTCTTATTAGGACAACATCAAAGAAACCCTACTATGAGGATGAACCATCTTTAACGTTGGGCCTTTCTGGTGAGAGTTACCAGTTTAATCAAGTCCCTCTTGATATGTCAACACAGACTTCACCTCTCAGCGTGGTTTCCTCTTTCTCCAGTGGAAGGGTGAAGAGGGAGAGAGAGCTTAGTAGTGAAGAGGTAGAGGCAACAGAGATAGAGATAGAGAGGGTTTCTTCAAGAGTCAGTGATGAAGATGAAGATGGCACCAATGTTAGGAAGAAGCTTAGGCTTAACAAAGAACAATCTGCTCTATTAGAAGAGAGTTTCAAGCAGCATAGTACTCTCAATCCGAAACAAAAGCAGGCTTTAGCTAAACACTTAAATCTACTGCCACGACAAGTTGAGGTGTGGTTTCAGAATCGCAGAGCCAGAACAAAGCTGAAGCAGACAGAAGTGGACTGCGATTTCTTAAAGAAATGTTGTGAAACATTGAAAGTTGAGAACATGAGGCTACAAAAGGAGCTTCAAGAACTGAAGGCACTGAAAGTAACACAACCCTTATACATGCCTATACCTGCAGCCACCCTCACTATGTGCCCTTCTTGTGAGAGGCTCGGTCATGGGCTCAGTGGTGCTGGTGTTTCCAATAAGACTACACCATTCTCCATCTCTATGCCTCCTAAGCCACACTTCTATAACCCTTTCACTAATCCTTCAGCAGCATGTTGA 852 0.4319 MAHDHDASISDLHLVLGLALTSTTQKETFTPSPQSNKVVDDHLTLIRTTSKKPYYEDEPSLTLGLSGESYQFNQVPLDMSTQTSPLSVVSSFSSGRVKRERELSSEEVEATEIEIERVSSRVSDEDEDGTNVRKKLRLNKEQSALLEESFKQHSTLNPKQKQALAKHLNLLPRQVEVWFQNRRARTKLKQTEVDCDFLKKCCETLKVENMRLQKELQELKALKVTQPLYMPIPAATLTMCPSCERLGHGLSGAGVSNKTTPFSISMPPKPHFYNPFTNPSAAC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0790 283 Coils Coil 202 222 - -
Lal23g0790 283 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Lal23g0790 283 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Lal23g0790 283 PANTHER - 13 283 - -
Lal23g0790 283 Pfam Homeobox associated leucine zipper 189 222 IPR003106 GO:0006355|GO:0043565
Lal23g0790 283 Gene3D - 138 187 - -
Lal23g0790 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 13 283 - -
Lal23g0790 283 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Lal23g0790 283 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Lal23g0790 283 CDD homeodomain 133 190 IPR001356 GO:0003677
Lal23g0790 283 SUPERFAMILY Homeodomain-like 124 190 IPR009057 -
Lal23g0790 283 SMART HOX_1 131 193 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0790 Lal-Chr23 10417104 10419774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0790 14 283 Homeobox Transcription Factor Family AT4G37790 60.357 1.24e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal23g0790 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0790 K09338 - gmx:100784129 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0840 16 5439779 5441903 Lal23g0790 23 10417104 10419774 PCT
Lal15g0207 15 1433386 1434850 Lal23g0790 23 10417104 10419774 PCT
Lal23g0790 23 10417104 10419774 Lal16g0840 16 5439779 5441903 PCT
Lal23g0790 23 10417104 10419774 Lal15g0207 15 1433386 1434850 PCT