Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0783 ATGGCTGGTTTGGATTTAGGAACTGCTTCACGCTATGCTCAAAACCTTCACAGAGGAAACTTGCACCATCACCAACATCACCACCAAGATTCCGAAGAACAAGACCATCACAATCATCACCATCGTGGTGCAGGTGCAGATGCGTTTTCCACCGAAGAAGATAATAAGAGCCAAGGTCCAGAGCTGGGGTCAGCCTCTGGCGGTGGAGATGTCATCGGCCGCCGTCCACGAGGCCGACCTCCTGGCTCCAAGAACAAGGCAAGGCCTCCGGTGATAATCACAAGAGAAAGTGCCAACACATTAAGGGCCCATATTCTTGAAGTAGGTAGAGGCGCAGACGTGTTGGATTGCGTCGCTACCTACGCACGCCGTCACCAAAGAGGGATCTGCATCCTCAGTGGCAATGGCACTGTAACTAATGTAAGACTCCGGCAGCCATCGGCTGCAGGAGCTGTCGTTACACTCCATGGGAGATTTGAGATATTATCCCTCTCGGGATCATTTCTTCCGCCTCCAGCTCCCCCAAGCGCTACTAGTCTCACCATCTACCTCGCCGGAGGACAAGGGCAGGTGGTGGGAGGTTGCGTCGTGGGGGAACTGATGGCGGCAGGACCAGTAATATTAATTGCAGCATCATTTACCAACGTGGCTTATGAAAGGTTGCCGTTGGAAGAGTATGAACAACATCTTCAGATGCAGCCACCTATTTCTCAGGGTTCTGATGGTGGTGTTGGAAATAACCCTTTTCCAGACCCTTCTTCTGGTTTGCCTTTCTTCAATTTGCCGTTGAATATGCAAAATGTTCAGATGCCAGTGGATGGTTGGGCTGGAAATTCAGCTCCACAAATAGTATATAAAAGCATTAGATCCACTTATCAATGGAGGTTAGTGTTTCCTGCTAGCAGTACTAATCTTTTGATAAAATGTTTGAAATGGTTGAAAAATGGAGTCATGCATCTCTGCCCTATGCGGGGAATGAATTGA 984 0.4898 MAGLDLGTASRYAQNLHRGNLHHHQHHHQDSEEQDHHNHHHRGAGADAFSTEEDNKSQGPELGSASGGGDVIGRRPRGRPPGSKNKARPPVIITRESANTLRAHILEVGRGADVLDCVATYARRHQRGICILSGNGTVTNVRLRQPSAAGAVVTLHGRFEILSLSGSFLPPPAPPSATSLTIYLAGGQGQVVGGCVVGELMAAGPVILIAASFTNVAYERLPLEEYEQHLQMQPPISQGSDGGVGNNPFPDPSSGLPFFNLPLNMQNVQMPVDGWAGNSAPQIVYKSIRSTYQWRLVFPASSTNLLIKCLKWLKNGVMHLCPMRGMN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0783 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 281 - -
Lal23g0783 327 MobiDBLite consensus disorder prediction 25 49 - -
Lal23g0783 327 ProSiteProfiles PPC domain profile profile. 98 234 IPR005175 -
Lal23g0783 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 230 - -
Lal23g0783 327 Gene3D - 101 234 - -
Lal23g0783 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 281 IPR014476 GO:0003680
Lal23g0783 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 215 IPR005175 -
Lal23g0783 327 MobiDBLite consensus disorder prediction 21 91 - -
Lal23g0783 327 CDD DUF296 102 169 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0783 Lal-Chr23 10348300 10350534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0783 1 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.072 3.14e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0783 - - csin:114283409 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0783 23 10348300 10350534 Lal23g0783 23 10348300 10350534 ECH
Lal15g0820 15 6038258 6039818 Lal23g0783 23 10348300 10350534 LSH
Lal15g0820 15 6038258 6039818 Lal23g0783 23 10348300 10350534 PCT
Lal23g1271 23 13800978 13802998 Lal23g0783 23 10348300 10350534 PCT
Lal23g0783 23 10348300 10350534 Lal15g0820 15 6038258 6039818 PCT
Lal23g0783 23 10348300 10350534 Lal23g1271 23 13800978 13802998 PCT