Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0782 ATGGATTCGTATTCTCCCTCTTCCATGATGGAAATCACTTCATATCCCTTCATTACTCCTACTTCCACCGTTCTAGCCCGCGCAACCACTCAATTCCCCTTCGCCTACCACCCTCAGCTTCCTCCACCGTCATCGTCGTCTGTTATCTCTTCCGACCCTTCCAACACCACCACCACCGCAACTACAACCACCACCTACGACGCCTCCTCCAAGAAAAAGAGGGGCCGTCCTAGGAAGTACTCGTCTGACGGCAACAATATCACTCATATGCCTTCTTTCGCCGGCCATGGTGGCGATAGTGGTGGCAGTGATTCGAGTAGCACACCGTCAACTGAAACTCGTGTAAAGAAACGTAGGGGAAGACCTCCGGGCTCTGGAAAGAAGCATTTGGGTGCTTCTGGTGATGGTGAGGTATTTGAGCATCATGTAATCTTGGTCGAATCTGGCGAGGACGTTGCAGAAAGAGTTATGGCCTATTGTCTTCAAGGGTCTCGGAAACTTTGTATTCTTTCTGCTAGCGGATTAGTCAGCAATGTCATCCTTCAACGGACACCTTTGTCTAGTGGCACCGCAACTTATGTGGGTCAATTTAATATTATATCTCTATCAAGCTTTTTGCCGCAATCTGGAAATGATGGTGAACATAGCAGTTTGAATGTGTTACTGGCAGGGTCTGATGGAAGGGTTTTTGGTGGTGTTGTTGGAATGCTAACTGCAGCATCACCTGTACAGATCATTGTGGGTAGCTTTGTTCCAAACGGGAAAAAATCAAGCTCCAATATCCTGAAATCTGGGCCTTCTTCAGCACCAACACCAAAATTGTTATACTTTGGTGGATCCATGAGTGCAACCAGTCCTACATTTCAAGGGCCTTCATCTGAGTCCTATGAGGGCAATGATCATAGTTCCTTTAGAGGGCCTGAACTCTACAATAATAATATGCAGATGGACCATCATCCACTATGGGATGGCCATAATCTGTGGAAGATGCTGCTTTGA 999 0.4705 MDSYSPSSMMEITSYPFITPTSTVLARATTQFPFAYHPQLPPPSSSSVISSDPSNTTTTATTTTTYDASSKKKRGRPRKYSSDGNNITHMPSFAGHGGDSGGSDSSSTPSTETRVKKRRGRPPGSGKKHLGASGDGEVFEHHVILVESGEDVAERVMAYCLQGSRKLCILSASGLVSNVILQRTPLSSGTATYVGQFNIISLSSFLPQSGNDGEHSSLNVLLAGSDGRVFGGVVGMLTAASPVQIIVGSFVPNGKKSSSNILKSGPSSAPTPKLLYFGGSMSATSPTFQGPSSESYEGNDHSSFRGPELYNNNMQMDHHPLWDGHNLWKMLL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0782 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 50 303 IPR039605 GO:0003680
Lal23g0782 332 SMART AT_hook_2 71 83 IPR017956 GO:0003677
Lal23g0782 332 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Lal23g0782 332 ProSiteProfiles PPC domain profile profile. 136 271 IPR005175 -
Lal23g0782 332 MobiDBLite consensus disorder prediction 36 134 - -
Lal23g0782 332 CDD DUF296 142 250 IPR005175 -
Lal23g0782 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 252 - -
Lal23g0782 332 Gene3D - 140 262 - -
Lal23g0782 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 251 IPR005175 -
Lal23g0782 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 50 303 - -
Lal23g0782 332 MobiDBLite consensus disorder prediction 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0782 Lal-Chr23 10341101 10344652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0782 71 290 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 42.353 1.49e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0782 - - var:108323770 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0782 23 10341101 10344652 Lal23g0782 23 10341101 10344652 ECH
Lal16g0284 16 1692669 1697061 Lal23g0782 23 10341101 10344652 PCT
Lal15g0218 15 1482052 1485015 Lal23g0782 23 10341101 10344652 PCT
Lal23g0782 23 10341101 10344652 Lal16g0284 16 1692669 1697061 PCT
Lal23g0782 23 10341101 10344652 Lal15g0218 15 1482052 1485015 PCT