Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0780 ATGCCTGTCCCACTTGCTCCTTATCCAACACCACCAGCTCCATATACATCACCACTTCCATCAGCAAATGGTGCACAGAGTCAACTTGTTTGTTCTGGTTGTAGAAACCTTTTACTCTATCCTGTTGTAGCCACCTCAGTGTGCTGTTCTGTTTGCAATGCAGTCACAGCAGTGCCACCACCTGGAACAGAAATGGCTCAGTTAGTTTGTGGATGCTGCCATACTTTACTTATGTACATTCGTGGAGCAACAAGTGTGCAATGCTCTTGTTGTCACACCATCAATCTAGCTTTGGAAGGGTCTCATGATCTTCACAAGGTTGCATGTATATATGTGTGTGTTAGAGAGAAAGGTAAGGTTATGAGACCCTACTTTGTTGGTAAGCATCAAATGTGCATTGTGATAGCAAACCAGGTAGCACATGTCAATTGTGGGAACTGCAGGATGCTACTTATGTACCAATATGGAGCAAGATCCGTGAAATGCGCAGTTTGCAACTTTGTAACATTTGTTGGGGCCTCAGCAAGCACCACCGAGCAGAAGCTCAGCACCTAA 555 0.4486 MPVPLAPYPTPPAPYTSPLPSANGAQSQLVCSGCRNLLLYPVVATSVCCSVCNAVTAVPPPGTEMAQLVCGCCHTLLMYIRGATSVQCSCCHTINLALEGSHDLHKVACIYVCVREKGKVMRPYFVGKHQMCIVIANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTFVGASASTTEQKLST 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0780 184 Pfam LSD1 zinc finger 70 94 IPR005735 -
Lal23g0780 184 Pfam LSD1 zinc finger 31 55 IPR005735 -
Lal23g0780 184 Pfam LSD1 zinc finger 144 168 IPR005735 -
Lal23g0780 184 PANTHER PROTEIN LSD1 1 109 IPR040319 -
Lal23g0780 184 PANTHER PROTEIN LSD1 135 181 IPR040319 -
Lal23g0780 184 PANTHER PROTEIN LOL1 1 109 - -
Lal23g0780 184 PANTHER PROTEIN LOL1 135 181 - -
Lal23g0780 184 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 67 96 IPR005735 -
Lal23g0780 184 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 28 58 IPR005735 -
Lal23g0780 184 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 141 171 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0780 Lal-Chr23 10331397 10334787 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lal23g0780 zf-LSD1 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0780 - - qsu:112000975 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0780 23 10331397 10334787 Lal23g0780 23 10331397 10334787 ECH
Lal15g0823 15 6059187 6062280 Lal23g0780 23 10331397 10334787 LSH
Lal16g0849 16 5518220 5520370 Lal23g0780 23 10331397 10334787 PCT
Lal15g0823 15 6059187 6062280 Lal23g0780 23 10331397 10334787 PCT
Lal23g1269 23 13779364 13781466 Lal23g0780 23 10331397 10334787 PCT
Lal23g0780 23 10331397 10334787 Lal16g0849 16 5518220 5520370 PCT
Lal23g0780 23 10331397 10334787 Lal15g0823 15 6059187 6062280 PCT
Lal23g0780 23 10331397 10334787 Lal23g1269 23 13779364 13781466 PCT