Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0778 ATGAGATCAAATCGAAGAGCAAAACCATCATCATCATCAGCAGCAGCAAAACCATCATCATCATCATCAGCAGCAGCATCATCATCATCATCAGCATCAGCAGCAGCAAAACCTGTTTTGGATGATGCTATATCAAAGTCCAATACTGAATCGGGTTTGAAACAACCGGTCAACTATGATTCTCCTTTACAAAACCCTAACCCTAATAGTGGTGGTGATGAAGCTGAGTGGAGTTACTGCACTGAGGAACAATTGGAGGAGTTTCTGGTGTTGAAATTGGAGTCTATATACAAGGAAGCGATTTCAAAGCTTGTTGCTTTGGGTTATAGCGAAGATATTGCTCTTAAGGCTGTTTTGAGCAATGGGCATTGTTATGGTGGCATGGATTTGTTGGCTAACATTTTGAGCAACTCCTTACAGGCTTTGAATAGTAGCAACGGTGATACGAAGGAGTTTAATACTGTTTTCTCTGATTTGAAGCAGTTAGAGAAGTATGCTTTGACGGGTTTGGTGTGTTTGTTACAACAGATTAGGCCTAATTTGAATAAAGGTCAAGCATTGTGTAGTTTGCTCATGAGTGATCTTCATATAGGTAGGGCTAGCACTATCGAGATTCCGGAGCCCAATAATGGGTACCCTGTTCCTGATGTTCTGGCTTCGTCTGCTGCTGTGGCTTCGGATGCAGCTGCTCATGGGGGTAGTATAAATTTGGCCGATGGCGTTATAGCTCAGTCTCTGTTTCAAGGGGGTTTGGGATTTTTAGGAAGCGGTGGTGGTGGCCAGGAGATAAATTTGAACTTGCAAAGGGAAATTGAATTCCCAGAGAGGTTTGATCTTTCGCCTTCAATGAAATCTTTACTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTATAGGGCAAACTTGAAAAGATCGCAGACACTGCCGGCAAGGGATGCATCTGGCAGTGCCATGTCAAATTTGGATTCTACGGCTGTATCTGGGGATCCCAATGAAAAGTCTGGTGTTGGCCAGTGTCTTGATGACCAAGATATTTTCAAAGAGCTGGTAAGTAAATTGTGTGATCTAAGTCTTCATGAGAAGGGGTTTGTGCCAGAAGATCAGAGGGATAAAGTCATAATCGATCTTGTGTGTCAGATTAAGGATCTTGAAAAACAGGTTGAGGAGCGACGAGAATGGGCTCAACAGAAGGCAGTGCAAGCAGCAAGAAAGCTAACCAGTGATATGAATGAGCTCAAAACCTTACGGATGGCAAGAGAGGAGGCTCAGAGGTTGAAGCAAGGTAAACAGTCGATTGATGACGCCACCATGAAGAAACTGTCAGAGATGGAGAGTGGTTTGAGACATGCTAGTGTTGAAGTGGACCGTGCAAATGTAGCTGTGAGGACACTAGAGCAAGAGAATGCAGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCGGAGACAACGACAGCTTGCAAAGAAGTTGCAAAAAGGGAGAAAAAGTTGCTGAAGAAGCTTCAGACTTGGGAGAAACAGAAAGCTAAGCTAGAGAAGGAAATTGCTGATGAAAACGTGAAGATATTGCAGACACAAGAAGAATTGGATCAGATTAGACAGAGTCAAAAAGAAGCTGAGATCAAGTGGAAGGAGGAGATGGAGGCTAAAGAGGAAGCCGAAAGACTGGTTGAGGAGGTACGCCGTTCTAAGGAAGCAGATGAAACCAATAATAAGAGGAGGCTTGAGGCTTTACGGGTAAAGACTGAGTTAGATTTCGAGCGCTACAAGGATGATGTACAAAGACTTGAGCAGGAACTTTCACGTCTTCAAACATCTGTTAAGTCCGCAAAGTTGCATTCAAATGCTTCATCTGGAAATAAGTCTGAGGGTCCGAAAACAGAGACAATTGCTAAGCTGCTTCAACAATTGGATAACCTGGAGGGCTTTTCAGAGGAAAATGAAGTGAATGGTGGCAGAGAATGCATTATATGCAAGAAAGGTGAAGTATCTGTTGTTTTCTTGCCGTGTACACACCAAGTTATGTGTGCCAGTTGCAGTGATGAGTATGGAAGAAATGCTCAAGCTGCTTGTCCTTGCTGCCGGGTTCTGATCCAACAGAGAATCCATGTATTTGGGGCAAGTTCTTAG 2136 0.4349 MRSNRRAKPSSSSAAAKPSSSSSAAASSSSSASAAAKPVLDDAISKSNTESGLKQPVNYDSPLQNPNPNSGGDEAEWSYCTEEQLEEFLVLKLESIYKEAISKLVALGYSEDIALKAVLSNGHCYGGMDLLANILSNSLQALNSSNGDTKEFNTVFSDLKQLEKYALTGLVCLLQQIRPNLNKGQALCSLLMSDLHIGRASTIEIPEPNNGYPVPDVLASSAAVASDAAAHGGSINLADGVIAQSLFQGGLGFLGSGGGGQEINLNLQREIEFPERFDLSPSMKSLLKRNVAMFAAGYRANLKRSQTLPARDASGSAMSNLDSTAVSGDPNEKSGVGQCLDDQDIFKELVSKLCDLSLHEKGFVPEDQRDKVIIDLVCQIKDLEKQVEERREWAQQKAVQAARKLTSDMNELKTLRMAREEAQRLKQGKQSIDDATMKKLSEMESGLRHASVEVDRANVAVRTLEQENAEIRAEMEASKLSASETTTACKEVAKREKKLLKKLQTWEKQKAKLEKEIADENVKILQTQEELDQIRQSQKEAEIKWKEEMEAKEEAERLVEEVRRSKEADETNNKRRLEALRVKTELDFERYKDDVQRLEQELSRLQTSVKSAKLHSNASSGNKSEGPKTETIAKLLQQLDNLEGFSEENEVNGGRECIICKKGEVSVVFLPCTHQVMCASCSDEYGRNAQAACPCCRVLIQQRIHVFGASS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0778 711 MobiDBLite consensus disorder prediction 1 35 - -
Lal23g0778 711 Coils Coil 489 544 - -
Lal23g0778 711 MobiDBLite consensus disorder prediction 1 75 - -
Lal23g0778 711 MobiDBLite consensus disorder prediction 309 334 - -
Lal23g0778 711 Pfam Family of unknown function (DUF6592) 92 200 IPR046527 -
Lal23g0778 711 MobiDBLite consensus disorder prediction 609 628 - -
Lal23g0778 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 708 IPR013083 -
Lal23g0778 711 MobiDBLite consensus disorder prediction 309 331 - -
Lal23g0778 711 ProSiteProfiles Zinc finger RING-type profile. 657 697 IPR001841 -
Lal23g0778 711 Coils Coil 548 572 - -
Lal23g0778 711 SUPERFAMILY RING/U-box 656 703 - -
Lal23g0778 711 Coils Coil 447 481 - -
Lal23g0778 711 MobiDBLite consensus disorder prediction 609 627 - -
Lal23g0778 711 Coils Coil 581 615 - -
Lal23g0778 711 Pfam Zinc finger, C3HC4 type (RING finger) 655 702 - -
Lal23g0778 711 PANTHER OS05G0141500 PROTEIN 23 710 IPR046934 -
Lal23g0778 711 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 710 - -
Lal23g0778 711 MobiDBLite consensus disorder prediction 44 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0778 Lal-Chr23 10297790 10303809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0778 657 707 C3H Transcription Factor Family AT1G73950 43.137 3.23e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0778 - - adu:107483267 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0778 23 10297790 10303809 Lal23g0778 23 10297790 10303809 ECH
Lal15g0827 15 6117941 6123586 Lal23g0778 23 10297790 10303809 LSH
Lal16g0285 16 1700427 1703759 Lal23g0778 23 10297790 10303809 PCT
Lal15g0827 15 6117941 6123586 Lal23g0778 23 10297790 10303809 PCT
Lal23g1268 23 13773186 13776531 Lal23g0778 23 10297790 10303809 PCT
Lal23g0778 23 10297790 10303809 Lal16g0285 16 1700427 1703759 PCT
Lal23g0778 23 10297790 10303809 Lal15g0827 15 6117941 6123586 PCT
Lal23g0778 23 10297790 10303809 Lal23g1268 23 13773186 13776531 PCT