Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0750 ATGGCGAATCCTTCTTCTTCTTCCTCCTCCTCCTCTCAATTCACCTACTCCTCCACCCCCTCCTACTTCCCCATGCCATTCCACCTCCAACAACCCCAAACCTACGCTCCGGCACCACCCCCTCCCGCCGTCGTCACCTACCCATACCCACAACCACCACCGTCACAATTCCAGCGCGACGCACATCAACTCTTTCAACGCGACGCACAGACAATAACCCCCGAAGCCCTAGAAAACGTGAAAGCCGCGATCGCCAACAGCGAGATCGAGCATAAGACCGAATCAAAGAAGAAATCCATCCCCCGCCGCGCCGCCGGCCTCACTTGGGAGGATCCGTCGCTCTCCGAATGGCCTGAGAACGATCACCGTGTGTTCTGCGGCGATCTAGGGAACGAGGTGAACGACGACGTTTTGTCGAAGGCGTTCGCTAAATTCCCGTCGTTTAACATGGCGAGAGTTGTGAGGGATAAAAGGTCTGGGAAAACGAAGGGGTATGGGTTTGTGAGTTTCGCTGATCCTGCGGATTTGGCCGTTGCGATGAAAGAGATGAATGGGAAGTACGTTGGGAATAGGCCAATTAAGCTTTGTAAGAGTAAATGGAGGGAGAGGACTGATGTTGATGCTGTGGAGAAGCAGAAGAAGCAGAGTAAGAAGAAGTCGAAATCGGCTAGGGTTGGTGTTTTGCATTACTGA 693 0.5325 MANPSSSSSSSSQFTYSSTPSYFPMPFHLQQPQTYAPAPPPPAVVTYPYPQPPPSQFQRDAHQLFQRDAQTITPEALENVKAAIANSEIEHKTESKKKSIPRRAAGLTWEDPSLSEWPENDHRVFCGDLGNEVNDDVLSKAFAKFPSFNMARVVRDKRSGKTKGYGFVSFADPADLAVAMKEMNGKYVGNRPIKLCKSKWRERTDVDAVEKQKKQSKKKSKSARVGVLHY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0750 230 MobiDBLite consensus disorder prediction 215 230 - -
Lal23g0750 230 MobiDBLite consensus disorder prediction 206 230 - -
Lal23g0750 230 PANTHER RNA-BINDING PROTEIN 42-LIKE 30 229 - -
Lal23g0750 230 MobiDBLite consensus disorder prediction 27 57 - -
Lal23g0750 230 CDD RRM_RBM42 116 198 IPR034215 -
Lal23g0750 230 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 229 - -
Lal23g0750 230 Gene3D - 66 207 IPR012677 -
Lal23g0750 230 SUPERFAMILY RNA-binding domain, RBD 106 201 IPR035979 GO:0003676
Lal23g0750 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 194 IPR000504 GO:0003723
Lal23g0750 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Lal23g0750 230 MobiDBLite consensus disorder prediction 33 55 - -
Lal23g0750 230 SMART rrm1_1 123 196 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0750 Lal-Chr23 10088011 10089826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0750 124 221 Eukaryotic Initiation Factors Gene Family AT1G71770 29.592 9.33e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0750 K25079 - adu:107484659 297.745