Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0748 ATGGTACTTAGTTTTAAGCATCAAATTGGTCTTGCTTGTGTCACACTACTCCTAACTGCATTATGCATCAACTCTGAGTACTCTTTTACTGAATCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGTAACCCAAGGGGAGCCTGTGGGTTTGGTGAATATGGAAAGACAATCAATGATGGCAGTGTATCAGGTGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAGGTTAGGTGCAAAATAGCAGAATACTGTGATGAAAATGGAGCATATGTGGTAGTAACAGACTATGGTGAAGGAGACAGAACAGATTTCATAATGAGCCCACGTGGGTACTCAAGGTTGGGACATAATGCAGATGCATCTGAAGTGTTGTTCAAATATGGTGTAGTGGATATTGAATACAAAAGGGTCCCATGCAAATACAATGGCTATAACATAATGTATAAGATCCATGAACACAGCAACAACCCCTTTTACTTGGCAATCCTCATTCTCTATGTAGATGGAACATATGATGTAACTTCTGCTGAGATATGGCAGGAAGAGTGCAAAGAATGGAGAGCATTACGCAGGGCCTATGGTGCAGTATTTGACACTACTAACCCACCAAGTGGTGAAATCAAGTTAAGGTTTCAAGTCAGTGGCAGTGTTGGGGTTTACTGGGTGCAGTCCAAGAATGTTATCCCTAGTGATTGGAAGGCTGGGTCTGCTTATGACACTCAGATTCAGCTCACTTAA 759 0.4242 MVLSFKHQIGLACVTLLLTALCINSEYSFTESRATYYGSPDCYGNPRGACGFGEYGKTINDGSVSGVSRLWRNGSGCGACYQVRCKIAEYCDENGAYVVVTDYGEGDRTDFIMSPRGYSRLGHNADASEVLFKYGVVDIEYKRVPCKYNGYNIMYKIHEHSNNPFYLAILILYVDGTYDVTSAEIWQEECKEWRALRRAYGAVFDTTNPPSGEIKLRFQVSGSVGVYWVQSKNVIPSDWKAGSAYDTQIQLT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0748 252 Gene3D - 20 146 IPR036908 -
Lal23g0748 252 Pfam Expansin C-terminal domain 153 236 IPR007117 -
Lal23g0748 252 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Lal23g0748 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Lal23g0748 252 Pfam Lytic transglycolase 65 141 IPR009009 -
Lal23g0748 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Lal23g0748 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lal23g0748 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lal23g0748 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Lal23g0748 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Lal23g0748 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Lal23g0748 252 PANTHER EXPANSIN-B3 4 251 - -
Lal23g0748 252 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 251 - -
Lal23g0748 252 SUPERFAMILY Barwin-like endoglucanases 18 150 IPR036908 -
Lal23g0748 252 Gene3D - 147 248 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0748 Lal-Chr23 10071469 10073664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0748 14 252 Expansin Gene Family AT4G17030 59.583 6.94e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0748 - - gmx:100779487 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0237 15 1628831 1630814 Lal23g0748 23 10071469 10073664 PCT
Lal23g0748 23 10071469 10073664 Lal15g0237 15 1628831 1630814 PCT