Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0746 ATGGGCAAGGAAGGACCTTGTTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCTGTACTTTGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACCGATAGTGTCGATCAAAGGGTTTTCAGGGTGAAGAGCTTATCATTGCATAAGAACAAAGAAGTGAAATTGCTCAAAAGAAAGGCGAGACAAACTGATTATGCTGTTACTGGAAAGTTCGACCCTGATTACAATCAAGGATCTCGAAAGTTTGTAGATGAAGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAACTCGGAGAGCTGCGTCCAATTTGGTGGCACATATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGAAGCTACGGTACCTTCGAAAAAGAGGACATGTGGAGGTCGTCCAAAGCCATCTTCTGTTGAGAAGCTCACAAAAGATTTATATACTATCCTTCATGAACAACAGTCATATTTTTCTGCATCTTCCGAAGATGATCTTATTTTCGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCACTATCGCTCATGAAGAAGAGTCTGAGGCTAGTTCTCTTTCTGTTGATAATAAACAATGCCAAATGAGTGAGTCATATTCATGTTCTGGTGGCGTTCCTGTGTACCGTGAGTACACTGGCATAAACTTCTCATCTCAGGGAGTTGGCAAAATTGTTCAACAGGAGGAACTTAAAAGGCATGTTTTCCCATATCAACTTATAGTATTGCATTATTTGGACAAGTCTCAGCTTGAAAGGCTACAATTTCTCGGAAATCATGATTCACCACTGTGCTTAATAGATTTTAATGACATAGCAAATTACGAGCAGTATACGAAAAACTTGACAAATGATGAGCAGCAGCAATTGTTGAAGTATCTCCCTGTGGTCGATTCTGCGGAACTTCCTAATAGCATTAAGATCATGTTTGATAGCTCTCAATTCAAGGAGAACTTAACTTATTTCCAGCAACTTCTTGGGGAAGGTGTCTTTGACATCTCTATGTTCAAGGCAAAACCTGAAGATTGCAAGACGTTGAAAAGGCTTGCGTTATCTAATCTGTCGACGTCAAAATGGGTAGAACAGTATAATTTTCTCAAGAGATGTAAAGACAGAGCTGGAAAATCTGTTGCTATGGGGTCTCCTGGTATGACATCTAGTAATGTTGCAAATGTCAAGAGATTGCGTGACGGTCAAAATAAAAAATTGGCAGAACTGAGGAAAACAATGAAGAGCCCGAAAAGTATGATCATAAATGCTGGATGCGATGACAAAGAAGTTGCCGAAGATGGTTCTTGCTTCAATGCAAAAAGCTTATTTGCATTGCCTCATGACCGTAGCTCGCACATGATGGATTCTTTAAACTTTGATTATGAGAATTGTGATCAGGATTTACTGCTAGAGGTGCCATCTAACAGTTCATTTCCACAGGCAGAGCTTCTGCACCCTACTACAAGCTTTGGTGCTCAAGCCAGCAGCAGCAGTAGATGTTGA 1617 0.4162 MGKEGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDSVDQRVFRVKSLSLHKNKEVKLLKRKARQTDYAVTGKFDPDYNQGSRKFVDEDTSNRSSSGSAISNSESCVQFGGTYASDLTGPAQSVVWEATVPSKKRTCGGRPKPSSVEKLTKDLYTILHEQQSYFSASSEDDLIFESETPMVSVEIGHGSILIRHPSTIAHEEESEASSLSVDNKQCQMSESYSCSGGVPVYREYTGINFSSQGVGKIVQQEELKRHVFPYQLIVLHYLDKSQLERLQFLGNHDSPLCLIDFNDIANYEQYTKNLTNDEQQQLLKYLPVVDSAELPNSIKIMFDSSQFKENLTYFQQLLGEGVFDISMFKAKPEDCKTLKRLALSNLSTSKWVEQYNFLKRCKDRAGKSVAMGSPGMTSSNVANVKRLRDGQNKKLAELRKTMKSPKSMIINAGCDDKEVAEDGSCFNAKSLFALPHDRSSHMMDSLNFDYENCDQDLLLEVPSNSSFPQAELLHPTTSFGAQASSSSRC 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0746 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 301 412 IPR044867 -
Lal23g0746 538 Coils Coil 430 450 - -
Lal23g0746 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lal23g0746 538 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 536 - -
Lal23g0746 538 Gene3D - 4 85 IPR013088 GO:0006355|GO:0008270
Lal23g0746 538 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Lal23g0746 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lal23g0746 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lal23g0746 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 536 IPR044589 -
Lal23g0746 538 MobiDBLite consensus disorder prediction 99 121 - -
Lal23g0746 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lal23g0746 538 Pfam Asx homology domain 297 376 IPR028020 -
Lal23g0746 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0746 Lal-Chr23 10056525 10061681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0746 1 523 C2C2-Gata Transcription Factor Family AT4G17570 50.373 1.63e-150 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal23g0746 ASXH 6.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0746 - - gmx:100799745 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0863 15 6468521 6473876 Lal23g0746 23 10056525 10061681 LSH
Lal16g0878 16 5759532 5765333 Lal23g0746 23 10056525 10061681 PCT
Lal15g0863 15 6468521 6473876 Lal23g0746 23 10056525 10061681 PCT
Lal23g1241 23 13587183 13597508 Lal23g0746 23 10056525 10061681 PCT
Lal23g0746 23 10056525 10061681 Lal16g0878 16 5759532 5765333 PCT
Lal23g0746 23 10056525 10061681 Lal15g0863 15 6468521 6473876 PCT
Lal23g0746 23 10056525 10061681 Lal23g1241 23 13587183 13597508 PCT