Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0742 ATGGTCTATACCCTTCAACATCAAGATCCATATGCAAACCATTCTCATCCAAGTGATTCTGAAAAGGAGTCTTACAGTTCTGATCTGGATAAGTCTGAGTTCAGATCTACAAGACCAACAGCAAACAGAAACATGACATTATGCACTCCTAGATCATTGGGCACTGAAATAGTGCACTCTAGTGTGGGGTTGGCAGCAAGACGTGCACACGGTCGTGAAAGAGGTGGACGGGGTAGAAGGGGTGGTAGACTTGTTGGAGGGGGTATTACTTGGGGTAGACGGGGCAGACGTGGTAGGCAGGGTGTTAGACTTGTTCAAGAGGATAGTGGAGAGCGTATTTCAGGTATTAGATGGGGCAGACTGGGAACACGTGGTACACAAGGTGGTAGACTCGTTGAAGGGGATAATGTAGGGGGTATGTGGGGTATTAGATGGGGCAGACGTGGCCCACGAAGTCGCCCTTCTCAGATGAGTGAAGAAAGGTCTTGCAAAAAAACCATTTTGTCATGGTTGATACATTGTAAGTGCATCGAGGAAGGTGAATGGGTAGGCTATATGGATGGCACCAAGAAAATTGCAACTATGACGGGAAGAATTACCATGGGTGCAATTCTTTGCAGTTGTTGCAAGAGGGAAAGATCTGTGTGGAACTTTGAGAAACATGTTGGAAGTGATCTTGGACGGCCATATGAACATATTTACCTCTTCAGGAAAGACAAATGCCTCCGGTACTACCAAATTGCTGCTTGTCTAAATGCCAGGGAACTAGGACGCCAGTGCCTGTTTTCCTTTGTGCCGAAAGAAACTGATGCTGACCCGAATGATGATGTTTGTTTAATCTGTGGGGATGGGGGAGATTTAATCTGCTGTGATACGTGCCCCTCCACTTATCATCCATCTTGTATGGATATGGAGATGGTTTGTGACTCTGAGTCTGAATGGTACTGTCCATATTGCACATGCAAATACTGCGGGCTTGTAGAAGAGAGTAAGCCATTGGATACATGTTCCCAGTGTGACAAAAAGTTTCATCGGCAGTGCTTTAAAGAATCTGAAAAGGAATTCTCAAAAGTTTATTCGAGATTTTACTGTAGTCCAGGCTGTAAAGAGATACATGAGACAATGGAGGGTTCACTTGGAATTAGAAATGATCTCTTTGCAAGTTACTCTTGGAGAGTAATCCGCCAAATTGACCTAAACCCCGAGGTGGTCTCTACTACTTGGAACCAACAATTAGAAAATAATTCAAAGGTTGGAGTTGCTTGGATGTTGATGAATGAAGCTTTTCAGACAATCACTGATAGATTCACGGGCATCGATGTGGTCCAAAGTGTGGTTTACAGTCGTGGATCAGATTTAACCAGAATCAATTTTCGCCGATTTTATACATTTGTCCTGGAGAAAGATGACGAGATCATCGCTGCAGCTTGTATTAGATTTCAAGGGAGAAGGATTGCAGAGATGCCTTTTGTTGCCACAGATGAGGCATACAGGCGCCAAGGAATTTGCAAGGTGTTAATGAGCGCAGTCGAATCGTTTCTATGCAACCTTAAGATTGAAAACCTGATCATTCCATCTGTTCCGGAGATTTCTGAGATGTGGACGCACAAATATGGCTTTCGTGAACTGAATGAAGAGTTGCAGAGTGAATTAACCTCTTGTAACATTCTGATGTTCCCTGGTTGTTTAAGACTGTACAAGGACTTATCTACATACATGATAGACGGTGACAATGACGGAGAAGCACAAATGGATCAAGCAGAGAGACCACTTCTGGACTTGAATGAGGTGCCTCATCCAGAAGATTAG 1809 0.4395 MVYTLQHQDPYANHSHPSDSEKESYSSDLDKSEFRSTRPTANRNMTLCTPRSLGTEIVHSSVGLAARRAHGRERGGRGRRGGRLVGGGITWGRRGRRGRQGVRLVQEDSGERISGIRWGRLGTRGTQGGRLVEGDNVGGMWGIRWGRRGPRSRPSQMSEERSCKKTILSWLIHCKCIEEGEWVGYMDGTKKIATMTGRITMGAILCSCCKRERSVWNFEKHVGSDLGRPYEHIYLFRKDKCLRYYQIAACLNARELGRQCLFSFVPKETDADPNDDVCLICGDGGDLICCDTCPSTYHPSCMDMEMVCDSESEWYCPYCTCKYCGLVEESKPLDTCSQCDKKFHRQCFKESEKEFSKVYSRFYCSPGCKEIHETMEGSLGIRNDLFASYSWRVIRQIDLNPEVVSTTWNQQLENNSKVGVAWMLMNEAFQTITDRFTGIDVVQSVVYSRGSDLTRINFRRFYTFVLEKDDEIIAAACIRFQGRRIAEMPFVATDEAYRRQGICKVLMSAVESFLCNLKIENLIIPSVPEISEMWTHKYGFRELNEELQSELTSCNILMFPGCLRLYKDLSTYMIDGDNDGEAQMDQAERPLLDLNEVPHPED 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0742 602 CDD NAT_SF 464 524 - -
Lal23g0742 602 ProSitePatterns Zinc finger PHD-type signature. 278 319 IPR019786 -
Lal23g0742 602 MobiDBLite consensus disorder prediction 67 92 - -
Lal23g0742 602 MobiDBLite consensus disorder prediction 1 47 - -
Lal23g0742 602 MobiDBLite consensus disorder prediction 14 37 - -
Lal23g0742 602 Pfam Acetyltransferase (GNAT) domain 459 548 IPR000182 GO:0016407
Lal23g0742 602 PANTHER GNAT FAMILY ACETYLTRANSFERASE 153 572 - -
Lal23g0742 602 ProSiteProfiles Zinc finger PHD-type profile. 275 322 IPR019787 -
Lal23g0742 602 SMART PHD_3 277 320 IPR001965 -
Lal23g0742 602 SMART PHD_3 321 369 IPR001965 -
Lal23g0742 602 SUPERFAMILY FYVE/PHD zinc finger 271 327 IPR011011 -
Lal23g0742 602 Pfam Tify domain binding domain 197 237 IPR032308 -
Lal23g0742 602 Gene3D - 426 557 - -
Lal23g0742 602 PANTHER PHD FINGER PROTEIN 12 153 572 IPR042163 GO:0003714|GO:0045892
Lal23g0742 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 334 IPR013083 -
Lal23g0742 602 SUPERFAMILY FYVE/PHD zinc finger 320 366 IPR011011 -
Lal23g0742 602 Pfam PHD-finger 278 322 IPR019787 -
Lal23g0742 602 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 423 563 IPR000182 GO:0016407
Lal23g0742 602 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 439 546 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0742 Lal-Chr23 9997706 10005030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0742 162 569 PHD Transcription Factor Family AT4G14920 39.759 1.79e-97 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal23g0742 Acetyltransf_10 1.4e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0742 - - lang:109331897 1016.14