Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0709 ATGGTTTTATTGTGGGGAAGAATAATAAGGAAGAACAACAAGCACAAAGCATCAAAGATGGTGGAGGAGTTAGTGACTCCTAACCACTTTTGGTGTCCAATTTCACTTGATATGATGAAGGATCCTGTGACATTATCCACTGGGATCACATATGATAGAGAAAACATAGAAAAGTGGTTTGAAAATGGGAACTACACATGTCCTTTTACCAACCAAATTGTCACAAACTTTGATCTCATTCCCAACCATACCCTTAGGATAATGATCCAAGAGTGGTGTGTGCAAAATAAGAAACATGGGGTTGAAAGAATTCCAACACCAAGAATACCCATTAGTCCATTTGAGGTAGTTGAGGTTCTTCTTCATGTAAAGGCCTTAACTTTACGTTTGGATCCATATGGGTGTTTAGAATTGGTGCAAAGAATTGAAAAATGGGGTGCTGAGAGTGAGAGGAATAGAAGGTGTATAGTGGAGAATGGAGCAGGTAATGTATTAGCCTCAGCATTTGATGCATTTGCAAATGATTCAACTGAGAGGAATGTGAGTGTATTGGATCAGATTTTGTCTTGTCTCATTTGGATGTTTCCACTTCAACTTGAAGCTAAAAAATCTTTGGGGTCATTGGCTTCATTACATTGCATGGTTTGGTTTTTGAAGCAACAAGATCTTTCAAAGAAAGAGAAATCCATTGTTGTATTGAAAGAGCTTCTTTCATTTGGTGATGAGCAAAATATGAAGGCCTTGGTGGAAATTGAAGGAGTCAATGAACTATTACTACAATTCCTTAACAAAAGAGTTTTTAGTACTCCAACCATTACTAAAGCTTCATTGAGTGTGGTTTGGTACTTAGTTTCTTCTTCTGATAATGACAACATAACATTGAGATTTGTTGAATTGGGTTTGGTTTCTTCAATGCTTGACATACTCATTGACTCAGAAAGGAACATTTGTGAGAAGGTTTTAGCTATTATTGACTCACTATGCAGTTGTGATGAAGGAAGAAAAAAAGCTTATGATAATGCACTAACAATCCCTCTTTTGGTTAAGAAACTATTGAGAGTTTCAGCATTAGGCACAGATTACTCTGTTTCTTCTATTTGGAAGCTATGCAAATTTGAAGAAAGTGATGAAGGGAAGATTCTAGTTGAAGCACTTCAAGTTGGTGCTTTTCAGAAGCTTTTGTTAGTGTTGCAAGTTGGTTGTGATGATAAAACCAAAGTGAAAACCACAGAACTTCTCAAATTGATGAATCCTTATAGGGCTGGTGTGGAATGCATAGACTCAGATTTTAAGAATCTTAAGAGATCAAATTAA 1314 0.3638 MVLLWGRIIRKNNKHKASKMVEELVTPNHFWCPISLDMMKDPVTLSTGITYDRENIEKWFENGNYTCPFTNQIVTNFDLIPNHTLRIMIQEWCVQNKKHGVERIPTPRIPISPFEVVEVLLHVKALTLRLDPYGCLELVQRIEKWGAESERNRRCIVENGAGNVLASAFDAFANDSTERNVSVLDQILSCLIWMFPLQLEAKKSLGSLASLHCMVWFLKQQDLSKKEKSIVVLKELLSFGDEQNMKALVEIEGVNELLLQFLNKRVFSTPTITKASLSVVWYLVSSSDNDNITLRFVELGLVSSMLDILIDSERNICEKVLAIIDSLCSCDEGRKKAYDNALTIPLLVKKLLRVSALGTDYSVSSIWKLCKFEESDEGKILVEALQVGAFQKLLLVLQVGCDDKTKVKTTELLKLMNPYRAGVECIDSDFKNLKRSN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0709 437 PANTHER WDSAM1 PROTEIN 15 436 IPR045185 GO:0061630
Lal23g0709 437 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 436 - -
Lal23g0709 437 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Lal23g0709 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 104 IPR013083 -
Lal23g0709 437 CDD RING-Ubox_PUB 30 72 IPR045210 -
Lal23g0709 437 SUPERFAMILY ARM repeat 148 403 IPR016024 -
Lal23g0709 437 Gene3D - 135 424 IPR011989 -
Lal23g0709 437 Pfam U-box domain 27 97 IPR003613 GO:0004842|GO:0016567
Lal23g0709 437 SUPERFAMILY RING/U-box 26 102 - -
Lal23g0709 437 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0709 Lal-Chr23 9742527 9743840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0709 23 435 U-box Gene Family AT5G37490 43.510 9.01e-110 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0709 - - gmx:100817623 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0709 23 9742527 9743840 Lal8g0482 8 3249242 3250552 PCT
Lal23g0709 23 9742527 9743840 Lal25g0488 25 3407803 3409104 PCT
Lal23g0709 23 9742527 9743840 Lal10g0942 10 16782537 16783850 PCT
Lal8g0482 8 3249242 3250552 Lal23g0709 23 9742527 9743840 PCT
Lal25g0488 25 3407803 3409104 Lal23g0709 23 9742527 9743840 PCT
Lal10g0942 10 16782537 16783850 Lal23g0709 23 9742527 9743840 PCT