Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0707 ATGGGACCACCGCCTTACTTGAGACCCAAGGCCCAAGCGAGAACAGTCGAGGCAGCTTGCATCTTATTGTTGGATTCAATTGGGGAGAAGCAGTTCCAGTTTATTGTCGGCATGAGCTTGCAAGCCCGAAACCAAAGGAGGGATAGGTCGAGGGTCCCTTCCCAAGCTGCTCGTCAGGAATGGATTCCTAGAGCATCCACCACCACCACCATTACCACTACCACCACCACCACTGCTATTGCTGCCACAGACCAGCCATCCAATTCACTGTTAGATTATCAGAATGGCGAATCTGGCAGCTCTAATCATAGTATTCTTGGTCCACCAACCAGTCAGCATAGAAGTATTGGTCCACCAACCAGTCAGCATAGAAGTATTGGTCCACCAACAAGTCAGCATAGAAGCATTGGTCCACCAACCAGTCAGCATAGAAGCATTGGTCCACCAACCAGTCAGCATAGAAGCATTGGTCCACCAACCAGTCAGCATAGAAGCATTGGTCCACCAATGAGTCAGCATAGAAGTATTGGCACACCAGCAAATCAGTATAGAAATAACCATGGTTCAAGGAGTCATGAGAGTCGCCCTGTGAATCAGAGAAAAGAAAAGGAAAAAGGGATAAGTGAGAAACATGTAGGGAGGGGATTACGGGACTCTAATTTACCTCAGCTGCTGCAAGAGATTCAGGAGAAGCTCATGAAAGGTGCCATTGAATGCATGATTTGCTATGACAATGTCCGAAGATCTGCACCTATCTGGTCTTGCTCAAGTTGTTACTCTATCTTTCACCTGAATTGTATCAAGAAGTGGGCCCGTGCACCGACTTCAGTCGATTTGTCTGCTGAGAAGAATCAAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTCTGTGCAGCACACATCGTCGAGGGAGATTAAGTATGTTTGCTTTTGTGGGAAGAGGCCAGACCCACCGTCTGATTTGTATCTGACACCACATTCATGCGGAGAACCATGTGGGAAGCCTCTTGAGAGGGAGGTCTTGGTTACTGGAGGGAGGAAGGAGGACCTCTGCCCTCATGCTTGTGTCTTGCAATGCCATCCTGGTCCATGCCCTCCTTGCAGAGCATTTGCACCACCATGTTTGTGTCCTTGTGGGAAGAAAAAAATTACTACTCGTTGCTCTGACCGGCAGTCTGTTCTTACATGCGGCCAGTGCTGTGAGAAGCTTCTTGAATGTGGGCGGCATCAGTGTGAGCGCGTTTGTCATGTGGGCCCTTGTGATCCTTGTGAGGTTCTAATCAATGCCTCTTGCTTTTGTAGTAAAAAGATGGAGGTTATTCTTTGTGGAGACATGACTGTGAAGGGTGAATTCAAAGCAGAAGGTGGAGTTTTTTCTTGTAGTTCCAATTGTGGAAAGAAACTTAGTTGTGGTAATCATGTCTGTATTGAGACTTGTCATCCAGGCATCTGTGGGGAATGTGACTTGTTGCCAAGCCGGATTAATACTTGTTGTTGTGGGAAGACTAGATTGGAGGAGGAGCGGAAGAGTTGTTTGGACCCGATACCTACCTGTTCACAAGTCTGTGGCAAGTCCCTTCCTTGTGGGATACATCATTGTAAAGAGGCATGTCATGCTGGGGATTGCTCTCCTTGTTTGGTTCTTGTCTCCCAGAAGTGTCGATGTGGCTCAACTTCCCGAAGTGTGGAATGCTATAAGACAACAATGGAGAATGAGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCCAAACAAGAATCTAAGTGAGGATTGGAATCTTCACTTCTGTTCTGTGGCATGCGGAAAGAAGTTAAGGTGTGGGCAGCATGTGTGTGAATCCCTGTGTCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTCACTGATTTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCCACTGCCTTGTGGCACACCACTTCCCTCATGTCAGCTTCCATGTTCAGCTCCTCAACCTTGTGGCCATCCACCCTCCCACAGCTGCCATTTTGGAGATTGCCCTCCTTGTTCAGTGACTGTAGCAAAAGAATGTATTGGTGGGCATGTTGTTCTTAGGAACATACCTTGTGGTTCAAAGGAAATTAGATGCAATAAGCTCTGTGGGAAGACCAGACAGTGTGGTTTACATGCCTGTGGCAGAACATGTCACGCTGCACCATGTGATAATCCATCTTCTACGGAAGGGTCCCGAGCTTCTTGTGGGCAAACATGTGGTGCTCCGAGGAGAGATTGTCGGCATACATGCACAGCTCGGTGTCACCCTTCATCCACATGTCCAGATATAAGATGTGAGTTCCCTGTCACAATCACTTGTTCTTGCGGCCGTATAACAGCAAATGTTCCCTGTGATGCTGGTGGTAGCAGCAATAACTACAATGCTGATGCCGTGCATGAAGCTTCCATTATTCAGAAGTTGCCTGCGCAGCTTCAACCGGTGGATGCAAATGGGAAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGATGATGAGTGTGCTAAGTTGGAGCGCAAAAGAGTTCTTGCAGATGCTTTTGAGATAACCCCTCCGAATCTGGATTTTCTCCATTTTGGTGAGAACTCAGGTTCTTCTGAACTGCTTTCTGACATGTTGAGACGTGATCCCAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGTTTTTAGTGCTTGGCAAGAGCAGAGGAACTACGCATGGTCTAAAAGTCCATGTCTTCTGTCCTATGCTAAAGGAAAACAGAGATGCAGTGAGGTTGATAGCTGAGAGATGGAAGCTTGCAGTGAATGCTGCTGGTTGGGAGCCAAAGCGTTTCATAGTTGTTCATGTTACCCCAAAATCGAAGGCTCCAGCCCGTGTGCTAGGGGTCAAGGGTACTACAACCATAAACACACCCCTTCCTCCTGCATTTGATCCTTTGGTAGACATGGATCCTCGACTTGTTGTTTCCTTCCTAGACTTGCCAAGGGATGCAGATATTAGTGCGTTGGTGCTGAGATTCGGTGGTGAGTGTGAACTTGTTTGGTTAAATGATAAAAATGCATTGGCTGTTTTTCATGATCCTGCTCGAGCAGCAACTGCAATGAGGAGGTTGGATCATGGCTCTGTTTACAACGGAGCTGTTTCATTTGCTCCGAACGTTGGTGCATCGGTGGCATCTTCAGCTACCAATGCCTGGGGAGGAGGAGCTGGAACTATGAAAGATGGAGCAGTGGCAGCATTGAAAGGTAATCCGTGGAAAAAGGCTGTTGTTCAAGAGGCAGGTTGGTTAGAAGATTCTTGGGGCGACGGAGAGTGGGCCACTGCCGGTTCTGCTATTGTCCAGCCACCATCTGTTTGGAAGAAAGAAGCACCCATTGCTGCTTCATTGAATCCTTGGAGTGTCTTAGATCAAGAATCATCCTCAAGTTCATCTGGTGCAACTGCTGCTAAAACTGAAGTTTCTAGGAAACAGGGTGAAAATAGTGCAGTGCCGAAATTGGAGCCTCATTCAGGTAGCTCAAATCTTGAAGGACAGCTTGGAGGAAACTTTGATGCATCAAGTGTTTCTGATGTTGTGGATGATTGGGAGAAGGCTTTTGAATGA 3666 0.4705 MGPPPYLRPKAQARTVEAACILLLDSIGEKQFQFIVGMSLQARNQRRDRSRVPSQAARQEWIPRASTTTTITTTTTTTAIAATDQPSNSLLDYQNGESGSSNHSILGPPTSQHRSIGPPTSQHRSIGPPTSQHRSIGPPTSQHRSIGPPTSQHRSIGPPTSQHRSIGPPMSQHRSIGTPANQYRNNHGSRSHESRPVNQRKEKEKGISEKHVGRGLRDSNLPQLLQEIQEKLMKGAIECMICYDNVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNQGFNWRCPGCQSVQHTSSREIKYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLEREVLVTGGRKEDLCPHACVLQCHPGPCPPCRAFAPPCLCPCGKKKITTRCSDRQSVLTCGQCCEKLLECGRHQCERVCHVGPCDPCEVLINASCFCSKKMEVILCGDMTVKGEFKAEGGVFSCSSNCGKKLSCGNHVCIETCHPGICGECDLLPSRINTCCCGKTRLEEERKSCLDPIPTCSQVCGKSLPCGIHHCKEACHAGDCSPCLVLVSQKCRCGSTSRSVECYKTTMENEKFTCEKPCGQKKNCGRHRCSERCCPLSNPNKNLSEDWNLHFCSVACGKKLRCGQHVCESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPLPSCQLPCSAPQPCGHPPSHSCHFGDCPPCSVTVAKECIGGHVVLRNIPCGSKEIRCNKLCGKTRQCGLHACGRTCHAAPCDNPSSTEGSRASCGQTCGAPRRDCRHTCTARCHPSSTCPDIRCEFPVTITCSCGRITANVPCDAGGSSNNYNADAVHEASIIQKLPAQLQPVDANGKKVPLGQRKLMCDDECAKLERKRVLADAFEITPPNLDFLHFGENSGSSELLSDMLRRDPKWVLSVEERCKFLVLGKSRGTTHGLKVHVFCPMLKENRDAVRLIAERWKLAVNAAGWEPKRFIVVHVTPKSKAPARVLGVKGTTTINTPLPPAFDPLVDMDPRLVVSFLDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGSVYNGAVSFAPNVGASVASSATNAWGGGAGTMKDGAVAALKGNPWKKAVVQEAGWLEDSWGDGEWATAGSAIVQPPSVWKKEAPIAASLNPWSVLDQESSSSSSGATAAKTEVSRKQGENSAVPKLEPHSGSSNLEGQLGGNFDASSVSDVVDDWEKAFE 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0707 1221 CDD RING-CH-C4HC3_NFX1 238 295 - -
Lal23g0707 1221 ProSiteProfiles Zinc finger PHD-type profile. 236 297 IPR019787 -
Lal23g0707 1221 SUPERFAMILY RING/U-box 229 299 - -
Lal23g0707 1221 CDD NF-X1-zinc-finger 396 444 - -
Lal23g0707 1221 MobiDBLite consensus disorder prediction 1187 1206 - -
Lal23g0707 1221 MobiDBLite consensus disorder prediction 81 187 - -
Lal23g0707 1221 MobiDBLite consensus disorder prediction 188 215 - -
Lal23g0707 1221 CDD NF-X1-zinc-finger 328 389 - -
Lal23g0707 1221 CDD NF-X1-zinc-finger 518 566 - -
Lal23g0707 1221 SMART znfxneu3 772 793 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 SMART znfxneu3 470 489 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 SMART znfxneu3 681 699 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 SMART znfxneu3 351 369 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 SMART znfxneu3 528 547 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 SMART znfxneu3 734 763 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 SMART znfxneu3 586 616 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 SMART znfxneu3 406 425 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 SMART znfxneu3 624 643 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 Pfam NF-X1 type zinc finger 528 545 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 Pfam NF-X1 type zinc finger 624 641 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 Pfam NF-X1 type zinc finger 681 698 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 Pfam NF-X1 type zinc finger 470 487 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 Pfam NF-X1 type zinc finger 353 368 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 Pfam NF-X1 type zinc finger 406 423 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 Pfam NF-X1 type zinc finger 586 597 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 Pfam NF-X1 type zinc finger 734 749 IPR000967 GO:0005634|GO:0008270
Lal23g0707 1221 CDD NF-X1-zinc-finger 671 719 - -
Lal23g0707 1221 CDD NF-X1-zinc-finger 761 810 - -
Lal23g0707 1221 MobiDBLite consensus disorder prediction 1157 1208 - -
Lal23g0707 1221 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 210 1218 - -
Lal23g0707 1221 CDD NF-X1-zinc-finger 460 505 - -
Lal23g0707 1221 ProSiteProfiles Zinc finger RING-type profile. 239 295 IPR001841 -
Lal23g0707 1221 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 210 1218 IPR034078 GO:0003700
Lal23g0707 1221 CDD NF-X1-zinc-finger 614 666 - -
Lal23g0707 1221 MobiDBLite consensus disorder prediction 81 215 - -
Lal23g0707 1221 MobiDBLite consensus disorder prediction 1157 1179 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lal23g0707 zf-NF-X1 0.19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0707 K12236 - gmx:106799700 1746.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0707 23 9728381 9733931 Lal23g0707 23 9728381 9733931 ECH