Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0685 ATGGATATTGAGGAGGAGATCCGTTCTTTACAGCTTGACTCAGCAGAAGAAAGTAATGGGTTGGTGAATCCGGAGGATGGAAAGCCAGAAGAAGTTGATAAATCTACTAAAATTGATGAAGATCCAAAGCAGGAGGTTCAACCACAGCTTGTCCAGGCTGATGAGCCAAAAGTGAAAGATAAGGAAACTCCTCCTGTGAAAGATGAAAAAGATGATCTAGAGATGAAGAAAAGACACGTGAATGTTGTGTTCATTGGTCATGTCGATGCTGGTAAGTCTACAACTGGAGGCCAAATACTTTTCCTCAGCGGTCAGGTTGATGAACGTACTATCCAAAAGTATGAGAAAGAAGCCAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGATACAAATGAAGAAGAGAGGGTAAAGGGGAAAACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGAAAACAAGGTTCACAATTTTGGATGCCCCTGGTCACAAAAGCTATGTTCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAATTTGAAACTGGATATGAGAAAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGTTGGGTGTGGCTAAGCTGCTTGTTGTTGTTAATAAAATGGATGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGATTCCATTTCTGAAGCAATCGGGATACAATGTGAAGAAAGATGTCCTGTTTTTACCATTATCTGGATTGAATGGTGCAAACATACAAACGAGAGTGGATAGAAGTATTTGTCCATGGTGGGATGGTCCTTGCTTATTCGAAGCCCTTGATTCTGTTGAACTTCCAACACGAGATCCCCAAGCTGCGTTCAGAATGCCTATAATTGATAAATTCAAAGACATGGGGACTGTTGTTATGGGCAAAGTGGAATCTGGTACTGCTCGTGAGGGGGATTCTTTGTTGGTAATGCCAAATAAGGATCACGTAAAAGTTGTTGCTATATTTATTGATGAAGATCGGGTTAAACGTGCTGGACCTGGAGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGATATATTATCTGGGTTTGTCCTGTCTTGTGTTGAAAGTCCAATACCAGCTGTTACCGAGTTCGTTGCCCAGTTGCAGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAAGAGTGTGAGATTGTTGAGCTCTTACATCAAATTGATCCAAAGACAAGGAAACCTATTAAAAAGAAAGTTCTCTTTGTGAAGAGTGGAGCTGGTGTTGTGTGCCGGGTTCAGGTTAGCAACACAATATGCATTGAGACATTCTCTCGTTTTCCACAACTTGGGAGGTTTACTCTTCGCACTGAAGATATATATATGCATGTTGACGCTATATGCTTTACTCTGTTCTGCAGGGAGAACAATTGCAGTGGGAAAAGTTACTGGTCTGTGAGTTTGCAACATTTTTCACTTGAGGAAGGGGATCCTGCACAACAAGTGGAGTTTGCAATATTGAGGCATATAATTCAAAGATCCAAGTTTGTGAAATGTTCATTTGGGTATCCATTTTTGCATTTACTTGGGGTAATTTATTCAAAGAAATGCTATTTGTTGCTGCTGGTACCAATGTTCTTTGATATGTTGCATTTGGCTTTTCTAGGCCTGGCTGCTTTTGTATTTTGGGGGTCACAGCTTTGTTATGTGTCACCCATTCCAACTGTGTTACTATATAAATTGAAATGGATGGGTTTGAATCAATCCACTTAA 1872 0.4049 MDIEEEIRSLQLDSAEESNGLVNPEDGKPEEVDKSTKIDEDPKQEVQPQLVQADEPKVKDKETPPVKDEKDDLEMKKRHVNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPLSGLNGANIQTRVDRSICPWWDGPCLFEALDSVELPTRDPQAAFRMPIIDKFKDMGTVVMGKVESGTAREGDSLLVMPNKDHVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDILSGFVLSCVESPIPAVTEFVAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELLHQIDPKTRKPIKKKVLFVKSGAGVVCRVQVSNTICIETFSRFPQLGRFTLRTEDIYMHVDAICFTLFCRENNCSGKSYWSVSLQHFSLEEGDPAQQVEFAILRHIIQRSKFVKCSFGYPFLHLLGVIYSKKCYLLLLVPMFFDMLHLAFLGLAAFVFWGSQLCYVSPIPTVLLYKLKWMGLNQST 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0685 623 MobiDBLite consensus disorder prediction 1 72 - -
Lal23g0685 623 Pfam Elongation factor Tu GTP binding domain 77 283 IPR000795 GO:0003924|GO:0005525
Lal23g0685 623 Gene3D - 58 301 IPR027417 -
Lal23g0685 623 PANTHER BNAA06G12300D PROTEIN 2 501 - -
Lal23g0685 623 Gene3D Translation factors 396 500 - -
Lal23g0685 623 CDD eRF3_II 309 387 - -
Lal23g0685 623 Pfam Elongation factor Tu C-terminal domain 394 491 IPR004160 -
Lal23g0685 623 MobiDBLite consensus disorder prediction 54 72 - -
Lal23g0685 623 MobiDBLite consensus disorder prediction 23 44 - -
Lal23g0685 623 CDD EF1_alpha 81 301 - -
Lal23g0685 623 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 397 492 IPR009001 -
Lal23g0685 623 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 306 IPR000795 GO:0003924|GO:0005525
Lal23g0685 623 Pfam Elongation factor Tu domain 2 321 387 IPR004161 GO:0005525
Lal23g0685 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 312 IPR027417 -
Lal23g0685 623 Gene3D Translation factors 306 390 - -
Lal23g0685 623 SUPERFAMILY Translation proteins 300 393 IPR009000 -
Lal23g0685 623 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Lal23g0685 623 CDD eRF3_C_III 395 491 - -
Lal23g0685 623 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Lal23g0685 623 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Lal23g0685 623 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Lal23g0685 623 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Lal23g0685 623 PANTHER TRANSLATION FACTOR 2 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0685 Lal-Chr23 9534327 9544340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0685 77 489 Eukaryotic Initiation Factors Gene Family AT5G60390 37.410 2.78e-90 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0685 K03267 - gmx:100784412 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0685 23 9534327 9544340 Lal23g0685 23 9534327 9544340 ECH
Lal16g0958 16 6360785 6369693 Lal23g0685 23 9534327 9544340 LSH
Lal15g0927 15 7108311 7116695 Lal23g0685 23 9534327 9544340 LSH